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results_wgbs_cchip.aux
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results_wgbs_cchip.aux
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\relax
\providecommand\hyper@newdestlabel[2]{}
\citation{Broeske2009}
\citation{Lipka2014}
\citation{Wilson2007}
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\@writefile{lof}{\contentsline {figure}{\numberline {6.1}{\ignorespaces Scatterplot of the global methylation levels in the early hematopoietic hierarchy in Dnmt1\textsuperscript {\slshape \relax \fontsize {9}{11}\selectfont \abovedisplayskip 8\p@ plus2\p@ minus4\p@ \abovedisplayshortskip \z@ plus\p@ \belowdisplayshortskip 4\p@ plus2\p@ minus2\p@ \def \leftmargin \leftmargini \topsep \z@ \parsep \parskip \itemsep \z@ {\leftmargin \leftmargini \topsep 4\p@ plus2\p@ minus2\p@ \parsep 2\p@ plus\p@ minus\p@ \itemsep \parsep }\belowdisplayskip \abovedisplayskip +/+}\xspace and Dnmt1\textsuperscript {\slshape \relax \fontsize {9}{11}\selectfont \abovedisplayskip 8\p@ plus2\p@ minus4\p@ \abovedisplayshortskip \z@ plus\p@ \belowdisplayshortskip 4\p@ plus2\p@ minus2\p@ \def \leftmargin \leftmargini \topsep \z@ \parsep \parskip \itemsep \z@ {\leftmargin \leftmargini \topsep 4\p@ plus2\p@ minus2\p@ \parsep 2\p@ plus\p@ minus\p@ \itemsep \parsep }\belowdisplayskip \abovedisplayskip -/chip}\xspace mouse strains. All CpGs have been mapped on \SI {100}{\kilo b} windows (slid by \SI {25}{\kilo b}) and the difference between the wild-type and hypomorphic hematopoietic stem/progenitor cells (HSPC) is visualized as dotplot. A black arrow indicates relatively persistent regions with roughly \SI {75}{\percent } methylation in normal HSCs, whose frequency is gradually decreasing in MPPs.\relax }}{46}{figure.caption.24}\protected@file@percent }
\newlabel{fig:wgbs_healthy_cchip1}{{6.1}{46}{Scatterplot of the global methylation levels in the early hematopoietic hierarchy in \dnmtwt and \dnmtchip mouse strains. All CpGs have been mapped on \SI {100}{\kilo b} windows (slid by \SI {25}{\kilo b}) and the difference between the wild-type and hypomorphic hematopoietic stem/progenitor cells (HSPC) is visualized as dotplot. A black arrow indicates relatively persistent regions with roughly \SI {75}{\percent } methylation in normal HSCs, whose frequency is gradually decreasing in MPPs.\relax }{figure.caption.24}{}}
\citation{Jeong2014}
\@writefile{lof}{\contentsline {figure}{\numberline {6.2}{\ignorespaces Scatterplot of the HSC/MPP3 contrast for Dnmt1\textsuperscript {\slshape \relax \fontsize {9}{11}\selectfont \abovedisplayskip 8\p@ plus2\p@ minus4\p@ \abovedisplayshortskip \z@ plus\p@ \belowdisplayshortskip 4\p@ plus2\p@ minus2\p@ \def \leftmargin \leftmargini \topsep \z@ \parsep \parskip \itemsep \z@ {\leftmargin \leftmargini \topsep 4\p@ plus2\p@ minus2\p@ \parsep 2\p@ plus\p@ minus\p@ \itemsep \parsep }\belowdisplayskip \abovedisplayskip +/+}\xspace (left panel) and Dnmt1\textsuperscript {\slshape \relax \fontsize {9}{11}\selectfont \abovedisplayskip 8\p@ plus2\p@ minus4\p@ \abovedisplayshortskip \z@ plus\p@ \belowdisplayshortskip 4\p@ plus2\p@ minus2\p@ \def \leftmargin \leftmargini \topsep \z@ \parsep \parskip \itemsep \z@ {\leftmargin \leftmargini \topsep 4\p@ plus2\p@ minus2\p@ \parsep 2\p@ plus\p@ minus\p@ \itemsep \parsep }\belowdisplayskip \abovedisplayskip -/chip}\xspace (right panel) hematopoietic progenitors. The CpGs have been mapped on \SI {100}{\kilo b} windows (slid by \SI {25}{\kilo b} steps) to generate these graphs of average methylation.\relax }}{47}{figure.caption.25}\protected@file@percent }
\newlabel{fig:wgbs_healthy_cchip2}{{6.2}{47}{Scatterplot of the HSC/MPP3 contrast for \dnmtwt (left panel) and \dnmtchip (right panel) hematopoietic progenitors. The CpGs have been mapped on \SI {100}{\kilo b} windows (slid by \SI {25}{\kilo b} steps) to generate these graphs of average methylation.\relax }{figure.caption.25}{}}
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\newlabel{chap:r:wgbs_chip_hsc:compromised}{{6.2}{47}{Leukemia-related demethylation revisited}{section.6.2}{}}
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