From 93791c3c318573fa0cf2a473d56656a8962d00b6 Mon Sep 17 00:00:00 2001
From: Yat-sing Ng <38100637+Over-There-Is@users.noreply.github.com>
Date: Tue, 5 Mar 2024 15:22:13 +0800
Subject: [PATCH 01/10] Update BA.2.86.* from China.md
---
BA.2.86.* from China.md | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/BA.2.86.* from China.md b/BA.2.86.* from China.md
index ee4dcf1..05844ec 100644
--- a/BA.2.86.* from China.md
+++ b/BA.2.86.* from China.md
@@ -352,7 +352,7 @@ Taiwan/CDC-F90791/2024|EPI_ISL_18838508|2024-01-09|本土|-|JN
Taiwan/CDC-F90792/2024|EPI_ISL_18838509|2024-01-09|本土|-|JN.1.4> T18453C>
C28201T(Orf8:S103L)> C28948T> G2527A, C12747A(Orf1a:T4161N), C27059T
Taiwan/CDC-W35379/2024|EPI_ISL_18838598|2024-01-09|输入|South Korea|JN.1> G14030A
Taiwan/CDC-W35397/2024|EPI_ISL_18838599|2024-01-09|输入|Vietnam|JN.1> C25566T>
G17122T(Orf1b:A1219S)> A11947G> C5986T> G3530A(Orf1a:D1089N), C5826T(Orf1a:T1854I), C8140T
-Liaoning/LNCDC-025-2/2024|EPI_ISL_18853625|2024-01-09|本土|-|JN.1.1> C9142T>
G22599C(S:R346T)> C4423T, C22311A(S:T250N), G28396A(Orf9b:G38D)
+Liaoning/LNCDC-025-2/2024|EPI_ISL_18853625|2024-01-09|本土|-|JN.1.1.5>
C4423T, C22311A(S:T250N), G28396A(Orf9b:G38D)
Liaoning/LNCDC-025-3/2024|EPI_ISL_18853626|2024-01-09|本土|-|JN.1> C1385T(Orf1a:H374Y)
Liaoning/LNCDC-027/2024|EPI_ISL_18853631|2024-01-09|本土|-|JN.1> C24034T>
A29700G> T25171A> A6518G(Orf1a:K2085E), T23377C(S:S940F)> C24381T, C28775T(N:P168S)
Heilongjiang/HLJCDC-0025/2024|EPI_ISL_18857565|2024-01-09|本土|-|JN.1.1> C9142T>
C23673T(S:S704L)> C20235T
@@ -445,7 +445,7 @@ Liaoning/LNCDC-045-2/2024|EPI_ISL_18876890|2024-01-23|本土|-|JN.1> T18471C>
C1314T(Orf1a:T350I)> G28904T(N:A211S)
Singapore/R7MQ18/2024|EPI_ISL_18831172|2024-01-24|输出|Taiwan, China|JN.1.1> C21654T(S:S31F)>
G2436T(Orf1a:R724I), C10702T
Hubei/HCDC-JM3683/2024|EPI_ISL_18853585|2024-01-24|本土|-|JN.1.4> T18453C>
C28201T(Orf7a:S103L)> T18465C, C19017T, A29885C
-Hong_Kong/VB24025484/2024|EPI_ISL_18872892|2024-01-24|本土|-|JN.1.11.1> A24819G(S:K1086R)>
C3177A(Orf1a:P971H), C18576T, C21654T(S:S31F), G29781T
+Hong_Kong/VB24025484/2024|EPI_ISL_18872892|2024-01-24|本土|-|KP.1>
C3177A(Orf1a:P971H), C18576T, C21654T(S:S31F), G29781T
Liaoning/LNCDC-044-1/2024|EPI_ISL_18876885|2024-01-24|本土|-|JN.1.1> C9142T>
C20178T> G12070T> A2871G(Orf1a:N869S), A15779G(Orf1b:K771R), G27930A(Orf8:V13I)> G72C
Liaoning/LNCDC-044-2/2024|EPI_ISL_18876886|2024-01-24|本土|-|JN.1
Liaoning/LNCDC-052-1/2024|EPI_ISL_18876904|2024-01-24|本土|-|JN.1.4> T18453C>
T889C, C2070T(Orf1a:T602I), C15613T(Orf1b:H716Y)> A23440T, A23541T(S:Y660F)
From 6255ad4d091c8f04cf9dc1fb65218edba4a9f2eb Mon Sep 17 00:00:00 2001
From: Yat-sing Ng <38100637+Over-There-Is@users.noreply.github.com>
Date: Fri, 8 Mar 2024 22:17:19 +0800
Subject: [PATCH 02/10] Update BA.2.86.* from China.md
---
BA.2.86.* from China.md | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/BA.2.86.* from China.md b/BA.2.86.* from China.md
index 05844ec..118e65f 100644
--- a/BA.2.86.* from China.md
+++ b/BA.2.86.* from China.md
@@ -102,7 +102,7 @@ Japan/EIS01-600/2023|EPI_ISL_18770426|2023-12-06|输出|Taiwan, China|<
Yunnan/YNCDC-3554/2023|EPI_ISL_18876953|2023-12-06|本土|-|JN.1>
C25782T> G16662A> C9857T
Yunnan/YNCDC-3577/2023|EPI_ISL_18876976|2023-12-06|本土|-|JN.1.4> T18453C>
T889C, C2070T(Orf1a:T602I), C15613T(Orf1b:H716Y)
Singapore/R91MR99/2023|EPI_ISL_18651236|2023-12-07|输出|China(Mainland)|JN.1.4> T18453C>
C28201T(Orf3a:S103L)> C28948T
-Shanghai/SCDC-HG1209-4147/2023|EPI_ISL_18703833|2023-12-07|输入|Malaysia|BA.2.86.1> A14397G>
C22986T(S:A475V)> T25476C
+Shanghai/SCDC-HG1209-4147/2023|EPI_ISL_18703833|2023-12-07|输入|Malaysia|JN.13.1> T25476C
Shanghai/SCDC-HG1209-4148/2023|EPI_ISL_18703834|2023-12-07|输入|Japan|JN.1.4> T18453C> A27751C(Orf7a:T120P)
Yunnan/YNCDC-3555/2023|EPI_ISL_18876954|2023-12-07|本土|-|JN.1.4> T18453C>
C28201T(Orf8:S103L)> C28948T> C21691T
Shanghai/SCDC-HG1210-4150/2023|EPI_ISL_18703835|2023-12-08|输入|Thailand|BA.2.86.1> C21034T(Orf1b:L2523F)>
T3049C, G8102A(Orf1a:V2613I), G10943A(Orf1a:V3560I), C18086T(Orf1b:T1540I)
From 7b66c93631f4f8ffda2293b921a48d1c80e77dbf Mon Sep 17 00:00:00 2001
From: Yat-sing Ng <38100637+Over-There-Is@users.noreply.github.com>
Date: Sun, 10 Mar 2024 02:53:11 +0800
Subject: [PATCH 03/10] Update BA.2.86.* from China.md
---
BA.2.86.* from China.md | 12 ++++++------
1 file changed, 6 insertions(+), 6 deletions(-)
diff --git a/BA.2.86.* from China.md b/BA.2.86.* from China.md
index 118e65f..1052e26 100644
--- a/BA.2.86.* from China.md
+++ b/BA.2.86.* from China.md
@@ -15,7 +15,7 @@ Shanghai/SCDC-HG1013-3785/2023|EPI_ISL_18465331|2023-10-12|输入|UAE|JN.1.4> T1
Shanghai/SCDC-XG10-14798/2023|EPI_ISL_18495093|2023-10-16|本土|-|BA.2.86.1> C364T>
C22993T> A6777T(Orf1a:Y2171F), C12049T
Shanghai/SCDC-HP-XG-1017-1/2023|EPI_ISL_18518388|2023-10-17|本土|-|JN.3> C11575T>
T27794C> G25687A(Orf3a:A99T)
Taiwan/CDC-W33195/2023|EPI_ISL_18458013|2023-10-20|输入|Japan|JN.1> T27056C
-Singapore/R78MR55/2023|EPI_ISL_18445258|2023-10-23|输出|China(Mainland)|JN.1.1> C21654T(S:S31F)> C29311T
+Singapore/R78MR55/2023|EPI_ISL_18445258|2023-10-23|输出|China(Mainland)|JN.1.1.7> C29311T
Yunnan/YNCDC-3270/2023|EPI_ISL_18488081|2023-10-23|本土|-|BA.2.86.1> C7528T>
G12332A(Orf1a:A4023T)> T28693C> C16409T(Orf1b:T981I)
Shanghai/SCDC-HG1027-3869/2023|EPI_ISL_18518355|2023-10-25|输入|Netherlands|JN.1.19> A3061G
Shanghai/SCDC-HG1027-3871/2023|EPI_ISL_18518357|2023-10-25 |输入|Germany|BA.2.86.1> T11614C>
G29449T> C8266T
@@ -181,7 +181,7 @@ Shanghai/SCDC-HG1219-4228/2023|EPI_ISL_18769881|2023-12-17|输入|Singapore|JN.1
Shanghai/SCDC-HG1219-4230/2023|EPI_ISL_18769883|2023-12-17|输入|France|JN.2>
C560T(Orf1a:R99C), C11752T(Orf1a:S2526N), C21595T, G24998A(S:D1146N), C26873T, del27680-27692(Orf7a:del97-100, fs101), C29732A
Shanghai/SCDC-XH1221-3_S9/2023|EPI_ISL_18769957|2023-12-17|本土|-|JN.1.1> G1636T(Orf1a:E457D), C1889T(Orf1a:R542C)
Liaoning/LNCDC-2024-003-2/2023|EPI_ISL_18797839|2023-12-17|本土|-|JN.1.1> C9142T>
G21238A, C28807T
-Fujian/FCDC-XM121906HG/2023|EPI_ISL_18686290|2023-12-18|输入|Australia|JN.1> C24034T>
A29700G> C19545T, C24370T> C5184T(Orf1a:P1640L)> T10084A, C23277T(S:T572I)
+Fujian/FCDC-XM121906HG/2023|EPI_ISL_18686290|2023-12-18|输入|Australia|JN.1.28>
C19545T, C24370T> C5184T(Orf1a:P1640L)> T10084A, C23277T(S:T572I)
Singapore/R94MR134/2023|EPI_ISL_18701018|2023-12-18|输出|China(Mainland)|BA.2.86.1> C29614T>
C23601T(S:S680F)> T19893A(Orf1b:D2142E)> A1365G(Orf1a:K367R), C5979T(Orf1a:S1905F)> G25494T> C2788T, T24046C(S:P1263L), C25350T
USA/CA-GBW-H20-354-4233/2023|EPI_ISL_18709967|2023-12-18|输出|Hong Kong, China|JN.1.1> C9142T> C2701T
Shanghai/SCDC-HG1220-4233/2023|EPI_ISL_18769884|2023-12-18|输入|Germany|JN.1> C18508T(Orf1b:L1681F)> C5654T
@@ -354,7 +354,7 @@ Taiwan/CDC-W35379/2024|EPI_ISL_18838598|2024-01-09|输入|South Korea|JN.1> G140
Taiwan/CDC-W35397/2024|EPI_ISL_18838599|2024-01-09|输入|Vietnam|JN.1> C25566T>
G17122T(Orf1b:A1219S)> A11947G> C5986T> G3530A(Orf1a:D1089N), C5826T(Orf1a:T1854I), C8140T
Liaoning/LNCDC-025-2/2024|EPI_ISL_18853625|2024-01-09|本土|-|JN.1.1.5>
C4423T, C22311A(S:T250N), G28396A(Orf9b:G38D)
Liaoning/LNCDC-025-3/2024|EPI_ISL_18853626|2024-01-09|本土|-|JN.1> C1385T(Orf1a:H374Y)
-Liaoning/LNCDC-027/2024|EPI_ISL_18853631|2024-01-09|本土|-|JN.1> C24034T>
A29700G> T25171A> A6518G(Orf1a:K2085E), T23377C(S:S940F)> C24381T, C28775T(N:P168S)
+Liaoning/LNCDC-027/2024|EPI_ISL_18853631|2024-01-09|本土|-|JN.1.28>
T25171A> A6518G(Orf1a:K2085E), T23377C(S:S940F)> C24381T, C28775T(N:P168S)
Heilongjiang/HLJCDC-0025/2024|EPI_ISL_18857565|2024-01-09|本土|-|JN.1.1> C9142T>
C23673T(S:S704L)> C20235T
Heilongjiang/HLJCDC-0027/2024|EPI_ISL_18857567|2024-01-09|本土|-|JN.1> del28254(Orf8:fs122)
Hong_Kong/VB24010875/2024|EPI_ISL_18872885|2024-01-09|本土|-|JN.1.4> T18453C>
C28201T(Orf8:S103L)> A21417G> A19407G> C18267T
@@ -386,7 +386,7 @@ USA/CA-GBW-H20-355-4081/2024|EPI_ISL_18886393|2024-01-13|输出|Taiwan, China|JN.1.1> C9142T>
C3809T(Orf1a:L1182F), C20441T(Orf1b:T2325I)
USA/CA-GBW-H20-355-3796/2024|EPI_ISL_18886439|2024-01-13|输出|Taiwan, China|JN.1> T18471C>
C9857T> C14097T
Taiwan/CDC-W35460/2024|EPI_ISL_18838514|2024-01-14|输入|Japan|JN.1.1> C9142T> C28419T(N:T49I)
-Taiwan/CDC-W35467/2024|EPI_ISL_18838515|2024-01-14|输入|Thailand|JN.1> C24034T>
A29700G> C19545T, C24370T> C5184T(Orf1a:P1640L)> C23277T(S:T572I)> T10084A> C23635T, C27002T
+Taiwan/CDC-W35467/2024|EPI_ISL_18838515|2024-01-14|输入|Thailand|JN.1.28>
C19545T, C24370T> C5184T(Orf1a:P1640L)> C23277T(S:T572I)> T10084A> C23635T, C27002T
USA/CA-GBW-H20-355-3560/2024|EPI_ISL_18886406|2024-01-14|输出|Taiwan, China|JN.1.22> G18756T, A19352C(Orf1b:N1962T)>
C7609T
USA/CA-GBW-H20-357-8352/2024|EPI_ISL_18886455|2024-01-14|输出|Taiwan, China|JN.1> C29272T>
del515-523(Orf1a:del84-86), C12445T
Fujian/FCDC-XM011703HG/2024|EPI_ISL_18805102|2024-01-15|输入|Taiwan, China|JN.1.1> G29395C(N:K374N)> G17266A(Orf1b:D1267N)
@@ -443,7 +443,7 @@ Hubei/HCDC-WH3682/2024|EPI_ISL_18853605|2024-01-23|本土|-|JN.1> C13620T> C1874
Hubei/HCDC-JM3684/2024|EPI_ISL_18853586|2024-01-23|本土|-|XDD> G3692T(Orf1a:V1143F)>
T5290C, C27476T(Orf7a:T28I), G28248A(~Orf8:D119N~)
Liaoning/LNCDC-045-2/2024|EPI_ISL_18876890|2024-01-23|本土|-|JN.1.1> C9142T>
G12070T> T11107C> C9733T, G24095T
Liaoning/LNCDC-045-3/2024|EPI_ISL_18876891|2024-01-23|本土|-|JN.1> T18471C>
C1314T(Orf1a:T350I)> G28904T(N:A211S)
-Singapore/R7MQ18/2024|EPI_ISL_18831172|2024-01-24|输出|Taiwan, China|JN.1.1> C21654T(S:S31F)>
G2436T(Orf1a:R724I), C10702T
+Singapore/R7MQ18/2024|EPI_ISL_18831172|2024-01-24|输出|Taiwan, China|JN.1.1.7> G2436T(Orf1a:R724I), C10702T
Hubei/HCDC-JM3683/2024|EPI_ISL_18853585|2024-01-24|本土|-|JN.1.4> T18453C>
C28201T(Orf7a:S103L)> T18465C, C19017T, A29885C
Hong_Kong/VB24025484/2024|EPI_ISL_18872892|2024-01-24|本土|-|KP.1>
C3177A(Orf1a:P971H), C18576T, C21654T(S:S31F), G29781T
Liaoning/LNCDC-044-1/2024|EPI_ISL_18876885|2024-01-24|本土|-|JN.1.1> C9142T>
C20178T> G12070T> A2871G(Orf1a:N869S), A15779G(Orf1b:K771R), G27930A(Orf8:V13I)> G72C
@@ -452,7 +452,7 @@ Liaoning/LNCDC-052-1/2024|EPI_ISL_18876904|2024-01-24|本土|-|JN.1.5> C6026T(Orf1a:P1921S)>
G20998A(Orf1b:D2511N)> G25440T(Orf3a:K16N)
Fujian/FCDC-XM012204HG/2024|EPI_ISL_18853577|2024-01-25|输入|Japan|JN.1.5> C6990T(Orf1a:S2242F)
Fujian/FCDC-LY20230152/2024|EPI_ISL_18853579|2024-01-25|本土|-|JN.1> C1392T(Orf1a:S376L), C5736T
-Fujian/FCDC-XM012208HG/2024|EPI_ISL_18853578|2024-01-25|输入|Singapore|JN.1> C24034T>
A29700G> C19545T, C24370T> C5184T(Orf1a:P1640L)> C23277T(S:T572I)> T10084A> C23635T> C1267T
+Fujian/FCDC-XM012208HG/2024|EPI_ISL_18853578|2024-01-25|输入|Singapore|JN.1.28>
C19545T, C24370T> C5184T(Orf1a:P1640L)> C23277T(S:T572I)> T10084A> C23635T> C1267T
Fujian/FCDC-QZ01S004/2024|EPI_ISL_18853580|2024-01-25|本土|-|JN.1.6>
G960A(Orf1a:R232H), G1186T, C11300T
Fujian/FCDC-XM012603HG/2024|EPI_ISL_18870005|2024-01-25|输入|Taiwan, China|JN.1.4> T18453C>
C25710T> C28312T> G6986T(Orf1a:G2241C)
Fujian/FCDC-XM012605HG/2024|EPI_ISL_18870006|2024-01-25|输入|Malaysia|JN.1> C8802T(Orf1a:T2846I)
From 9a6fe132c33e43fb20f91924cf83bdd6912d950d Mon Sep 17 00:00:00 2001
From: Yat-sing Ng <38100637+Over-There-Is@users.noreply.github.com>
Date: Sun, 10 Mar 2024 20:06:56 +0800
Subject: [PATCH 04/10] Update BA.2.86.* from China.md
---
BA.2.86.* from China.md | 8 ++++----
1 file changed, 4 insertions(+), 4 deletions(-)
diff --git a/BA.2.86.* from China.md b/BA.2.86.* from China.md
index 1052e26..710cc9b 100644
--- a/BA.2.86.* from China.md
+++ b/BA.2.86.* from China.md
@@ -181,7 +181,7 @@ Shanghai/SCDC-HG1219-4228/2023|EPI_ISL_18769881|2023-12-17|输入|Singapore|JN.1
Shanghai/SCDC-HG1219-4230/2023|EPI_ISL_18769883|2023-12-17|输入|France|JN.2>
C560T(Orf1a:R99C), C11752T(Orf1a:S2526N), C21595T, G24998A(S:D1146N), C26873T, del27680-27692(Orf7a:del97-100, fs101), C29732A
Shanghai/SCDC-XH1221-3_S9/2023|EPI_ISL_18769957|2023-12-17|本土|-|JN.1.1> G1636T(Orf1a:E457D), C1889T(Orf1a:R542C)
Liaoning/LNCDC-2024-003-2/2023|EPI_ISL_18797839|2023-12-17|本土|-|JN.1.1> C9142T>
G21238A, C28807T
-Fujian/FCDC-XM121906HG/2023|EPI_ISL_18686290|2023-12-18|输入|Australia|JN.1.28>
C19545T, C24370T> C5184T(Orf1a:P1640L)> T10084A, C23277T(S:T572I)
+Fujian/FCDC-XM121906HG/2023|EPI_ISL_18686290|2023-12-18|输入|Australia|JN.1.28> C19545T, C24370T>
C5184T(Orf1a:P1640L)> T10084A, C23277T(S:T572I)
Singapore/R94MR134/2023|EPI_ISL_18701018|2023-12-18|输出|China(Mainland)|BA.2.86.1> C29614T>
C23601T(S:S680F)> T19893A(Orf1b:D2142E)> A1365G(Orf1a:K367R), C5979T(Orf1a:S1905F)> G25494T> C2788T, T24046C(S:P1263L), C25350T
USA/CA-GBW-H20-354-4233/2023|EPI_ISL_18709967|2023-12-18|输出|Hong Kong, China|JN.1.1> C9142T> C2701T
Shanghai/SCDC-HG1220-4233/2023|EPI_ISL_18769884|2023-12-18|输入|Germany|JN.1> C18508T(Orf1b:L1681F)> C5654T
@@ -354,7 +354,7 @@ Taiwan/CDC-W35379/2024|EPI_ISL_18838598|2024-01-09|输入|South Korea|JN.1> G140
Taiwan/CDC-W35397/2024|EPI_ISL_18838599|2024-01-09|输入|Vietnam|JN.1> C25566T>
G17122T(Orf1b:A1219S)> A11947G> C5986T> G3530A(Orf1a:D1089N), C5826T(Orf1a:T1854I), C8140T
Liaoning/LNCDC-025-2/2024|EPI_ISL_18853625|2024-01-09|本土|-|JN.1.1.5>
C4423T, C22311A(S:T250N), G28396A(Orf9b:G38D)
Liaoning/LNCDC-025-3/2024|EPI_ISL_18853626|2024-01-09|本土|-|JN.1> C1385T(Orf1a:H374Y)
-Liaoning/LNCDC-027/2024|EPI_ISL_18853631|2024-01-09|本土|-|JN.1.28>
T25171A> A6518G(Orf1a:K2085E), T23377C(S:S940F)> C24381T, C28775T(N:P168S)
+Liaoning/LNCDC-027/2024|EPI_ISL_18853631|2024-01-09|本土|-|JN.1.28> T25171A>
A6518G(Orf1a:K2085E), T23377C(S:S940F)> C24381T, C28775T(N:P168S)
Heilongjiang/HLJCDC-0025/2024|EPI_ISL_18857565|2024-01-09|本土|-|JN.1.1> C9142T>
C23673T(S:S704L)> C20235T
Heilongjiang/HLJCDC-0027/2024|EPI_ISL_18857567|2024-01-09|本土|-|JN.1> del28254(Orf8:fs122)
Hong_Kong/VB24010875/2024|EPI_ISL_18872885|2024-01-09|本土|-|JN.1.4> T18453C>
C28201T(Orf8:S103L)> A21417G> A19407G> C18267T
@@ -386,7 +386,7 @@ USA/CA-GBW-H20-355-4081/2024|EPI_ISL_18886393|2024-01-13|输出|Taiwan, China|JN.1.1> C9142T>
C3809T(Orf1a:L1182F), C20441T(Orf1b:T2325I)
USA/CA-GBW-H20-355-3796/2024|EPI_ISL_18886439|2024-01-13|输出|Taiwan, China|JN.1> T18471C>
C9857T> C14097T
Taiwan/CDC-W35460/2024|EPI_ISL_18838514|2024-01-14|输入|Japan|JN.1.1> C9142T> C28419T(N:T49I)
-Taiwan/CDC-W35467/2024|EPI_ISL_18838515|2024-01-14|输入|Thailand|JN.1.28>
C19545T, C24370T> C5184T(Orf1a:P1640L)> C23277T(S:T572I)> T10084A> C23635T, C27002T
+Taiwan/CDC-W35467/2024|EPI_ISL_18838515|2024-01-14|输入|Thailand|JN.1.28> C19545T, C24370T>
C5184T(Orf1a:P1640L)> C23277T(S:T572I)> T10084A> C23635T, C27002T
USA/CA-GBW-H20-355-3560/2024|EPI_ISL_18886406|2024-01-14|输出|Taiwan, China|JN.1.22> G18756T, A19352C(Orf1b:N1962T)>
C7609T
USA/CA-GBW-H20-357-8352/2024|EPI_ISL_18886455|2024-01-14|输出|Taiwan, China|JN.1> C29272T>
del515-523(Orf1a:del84-86), C12445T
Fujian/FCDC-XM011703HG/2024|EPI_ISL_18805102|2024-01-15|输入|Taiwan, China|JN.1.1> G29395C(N:K374N)> G17266A(Orf1b:D1267N)
@@ -452,7 +452,7 @@ Liaoning/LNCDC-052-1/2024|EPI_ISL_18876904|2024-01-24|本土|-|JN.1.5> C6026T(Orf1a:P1921S)>
G20998A(Orf1b:D2511N)> G25440T(Orf3a:K16N)
Fujian/FCDC-XM012204HG/2024|EPI_ISL_18853577|2024-01-25|输入|Japan|JN.1.5> C6990T(Orf1a:S2242F)
Fujian/FCDC-LY20230152/2024|EPI_ISL_18853579|2024-01-25|本土|-|JN.1> C1392T(Orf1a:S376L), C5736T
-Fujian/FCDC-XM012208HG/2024|EPI_ISL_18853578|2024-01-25|输入|Singapore|JN.1.28>
C19545T, C24370T> C5184T(Orf1a:P1640L)> C23277T(S:T572I)> T10084A> C23635T> C1267T
+Fujian/FCDC-XM012208HG/2024|EPI_ISL_18853578|2024-01-25|输入|Singapore|JN.1.28> C19545T, C24370T>
C5184T(Orf1a:P1640L)> C23277T(S:T572I)> T10084A> C23635T> C1267T
Fujian/FCDC-QZ01S004/2024|EPI_ISL_18853580|2024-01-25|本土|-|JN.1.6>
G960A(Orf1a:R232H), G1186T, C11300T
Fujian/FCDC-XM012603HG/2024|EPI_ISL_18870005|2024-01-25|输入|Taiwan, China|JN.1.4> T18453C>
C25710T> C28312T> G6986T(Orf1a:G2241C)
Fujian/FCDC-XM012605HG/2024|EPI_ISL_18870006|2024-01-25|输入|Malaysia|JN.1> C8802T(Orf1a:T2846I)
From 836093940cba7975a731ed7530659b025184f351 Mon Sep 17 00:00:00 2001
From: Yat-sing Ng <38100637+Over-There-Is@users.noreply.github.com>
Date: Thu, 14 Mar 2024 18:22:55 +0800
Subject: [PATCH 05/10] Update BA.2.86.* from China.md
---
BA.2.86.* from China.md | 88 ++++++++++++++++++++---------------------
1 file changed, 44 insertions(+), 44 deletions(-)
diff --git a/BA.2.86.* from China.md b/BA.2.86.* from China.md
index 710cc9b..648c500 100644
--- a/BA.2.86.* from China.md
+++ b/BA.2.86.* from China.md
@@ -11,7 +11,7 @@ Fujian/FCDC-XM091701HG/2023|EPI_ISL_18330328|2023-09-17|输入|Taiwan, China| T11614C> G29449T
Hong Kong/VK23014485/2023|EPI_ISL_18526591|2023-10-10|本土|-|BA.2.86.1> T11614C> C12085T
Shanghai/SCDC-HG1013-3778/2023|EPI_ISL_18465327|2023-10-11|输入|Switzerland|JN.1.1> A4912G, T16461C
-Shanghai/SCDC-HG1013-3785/2023|EPI_ISL_18465331|2023-10-12|输入|UAE|JN.1.4> T18453C> C28201T(Orf8:S103L)
+Shanghai/SCDC-HG1013-3785/2023|EPI_ISL_18465331|2023-10-12|输入|UAE|JN.1.4.5
Shanghai/SCDC-XG10-14798/2023|EPI_ISL_18495093|2023-10-16|本土|-|BA.2.86.1> C364T>
C22993T> A6777T(Orf1a:Y2171F), C12049T
Shanghai/SCDC-HP-XG-1017-1/2023|EPI_ISL_18518388|2023-10-17|本土|-|JN.3> C11575T>
T27794C> G25687A(Orf3a:A99T)
Taiwan/CDC-W33195/2023|EPI_ISL_18458013|2023-10-20|输入|Japan|JN.1> T27056C
@@ -47,7 +47,7 @@ Shanghai/SCDC-HG1124-4020/2023|EPI_ISL_18634026|2023-11-22|输入|Thailand| G18803T(Orf1b:S1779I)
Shanghai/SCDC-HG1125-4026/2023|EPI_ISL_18634005|2023-11-23|输入|Singapore|JN.1.5
Shanghai/SCDC-HG1125-4029/2023|EPI_ISL_18634027|2023-11-23|输入|Singapore|JN.1.5
-Shanghai/SCDC-HG1125-4030/2023|EPI_ISL_18634015|2023-11-23|输入|Singapore|JN.1.4> T18453C>
C28201T(Orf3a:S103L)> C28948T> C12778T> T14349A(Orf1b:D294E)
+Shanghai/SCDC-HG1125-4030/2023|EPI_ISL_18634015|2023-11-23|输入|Singapore|JN.1.4.5> C28948T> C12778T> T14349A(Orf1b:D294E)
Shanghai/SCDC-HG1126-4039/2023|EPI_ISL_18633990|2023-11-24|输入|Russia|JN.1> C23896G> C20823T
Shanghai/SCDC-HG1128-4047/2023|EPI_ISL_18634028|2023-11-26|输入|Vietnam|BA.2.86.2 > T1507C> del26494
Shanghai/SCDC-HG1128-4052/2023|EPI_ISL_18633992|2023-11-26|输入|France|JN.1>
A6393G(Orf1a:D2043G), T11891C, T28135C(Orf8:V81A)
@@ -73,7 +73,7 @@ Shanghai/SCDC-HG1204-4097/2023|EPI_ISL_18672165|2023-12-03|输入|Germany|BA.2.8
Shanghai/SCDC-HG1204-4099/2023|EPI_ISL_18672167|2023-12-03|输入|UAE|JN.1.4> T18453C> C12242T(Orf1a:R3993C)
Shanghai/SCDC-HG1204-4100/2023|EPI_ISL_18672168|2023-12-03|输入|UK|JN.1.1> C9142T
Shanghai/SCDC-HG1205-4105/2023|EPI_ISL_18672172|2023-12-03|输入|Philippines|JN.1.1> C9142T> G7829A(Orf1a:V2511I)
-Shanghai/SCDC-HG1205-4109/2023|EPI_ISL_18672175|2023-12-03|输入|Singapore|JN.1.4> T18453C>
C28201T(Orf3a:S103L)> C28948T> A22116C(S:N185T)
+Shanghai/SCDC-HG1205-4109/2023|EPI_ISL_18672175|2023-12-03|输入|Singapore|JN.1.4.5> C28948T> A22116C(S:N185T)
Shanghai/SCDC-HG1205-4110/2023|EPI_ISL_18672176|2023-12-03|输入|Singapore|JN.1.5> C2485T, A16305G
Shanghai/SCDC-HG1205-4111/2023|EPI_ISL_18672177|2023-12-03|输入|Hong Kong, China|JN.1.4> T18453C
Sichuan/CDCDC-19-CX3594/2023|EPI_ISL_18721640|2023-12-03|本土|-|JN.1.1> C9142T>
G2035A> G20521A(Orf1b:D2352N), T22515C, G22518A
@@ -92,19 +92,19 @@ Fujian/FCDC-XM121303HG/2023|EPI_ISL_18647483|2023-12-06|输入|Singapore|BA.2.86
Shanghai/SCDC-HG1208-4131/2023|EPI_ISL_18703821|2023-12-06|输入|South Korea|JN.2> G27014T>
C25603T> C9808T, A10042G, A21137G(Orf1b:K2557R), C27297T
Shanghai/SCDC-HG1208-4132/2023|EPI_ISL_18703822|2023-12-06|输入|Singapore|JN.1> T18471C
Shanghai/SCDC-HG1208-4134/2023|EPI_ISL_18703824|2023-12-06|输入|Philippines|JN.1.1> C9142T> T27772C(Orf7b:L6S)
-Shanghai/SCDC-HG1208-4137/2023|EPI_ISL_18703826|2023-12-06|输入|Singapore|JN.1.4> T18453C>
C28201T(Orf8:S103L)> C28948T> A6063G
+Shanghai/SCDC-HG1208-4137/2023|EPI_ISL_18703826|2023-12-06|输入|Singapore|JN.1.4.5> C28948T> A6063G
Shanghai/SCDC-HG1208-4138/2023|EPI_ISL_18703827|2023-12-06|输入|Hong Kong, China|JN.1> G2782T> del686-694(Orf1a:del141-143)
Shanghai/SCDC-HG1208-4139/2023|EPI_ISL_18703828|2023-12-06|输入|Australia|JN.1> A9935G> C21859T
Shanghai/SCDC-HG1208-4141/2023|EPI_ISL_18703829|2023-12-06|输入|Singapore|JN.1.1> C9142T>
C12651T(Orf1a:T4129I)> T14037C
Shanghai/SCDC-HG1208-4142/2023|EPI_ISL_18703830|2023-12-06|输入|Turkey|BA.2.86.1> C2704T> C18326T(Orf1b:A1620V)
Shanghai/SCDC-HG1208-4144/2023|EPI_ISL_18703832|2023-12-06|输入|Singapore|JN.1.5> C29627T(Orf10:R24C)>
C6363T(Orf1a:A2033V)
-Japan/EIS01-600/2023|EPI_ISL_18770426|2023-12-06|输出|Taiwan, China|JN.1.4> T18453C>
C28201T(Orf8:S103L)> C28948T> C25624T(Orf3a:H78Y)
+Japan/EIS01-600/2023|EPI_ISL_18770426|2023-12-06|输出|Taiwan, China|JN.1.4.5> C28948T> C25624T(Orf3a:H78Y)
Yunnan/YNCDC-3554/2023|EPI_ISL_18876953|2023-12-06|本土|-|JN.1>
C25782T> G16662A> C9857T
Yunnan/YNCDC-3577/2023|EPI_ISL_18876976|2023-12-06|本土|-|JN.1.4> T18453C>
T889C, C2070T(Orf1a:T602I), C15613T(Orf1b:H716Y)
-Singapore/R91MR99/2023|EPI_ISL_18651236|2023-12-07|输出|China(Mainland)|JN.1.4> T18453C>
C28201T(Orf3a:S103L)> C28948T
+Singapore/R91MR99/2023|EPI_ISL_18651236|2023-12-07|输出|China(Mainland)|JN.1.4.5> C28948T
Shanghai/SCDC-HG1209-4147/2023|EPI_ISL_18703833|2023-12-07|输入|Malaysia|JN.13.1> T25476C
Shanghai/SCDC-HG1209-4148/2023|EPI_ISL_18703834|2023-12-07|输入|Japan|JN.1.4> T18453C> A27751C(Orf7a:T120P)
-Yunnan/YNCDC-3555/2023|EPI_ISL_18876954|2023-12-07|本土|-|JN.1.4> T18453C>
C28201T(Orf8:S103L)> C28948T> C21691T
+Yunnan/YNCDC-3555/2023|EPI_ISL_18876954|2023-12-07|本土|-|JN.1.4.5> C28948T> C21691T
Shanghai/SCDC-HG1210-4150/2023|EPI_ISL_18703835|2023-12-08|输入|Thailand|BA.2.86.1> C21034T(Orf1b:L2523F)>
T3049C, G8102A(Orf1a:V2613I), G10943A(Orf1a:V3560I), C18086T(Orf1b:T1540I)
Yunnan/YNCDC-3570/2023|EPI_ISL_18876969|2023-12-08|本土|-|JN.11> C16887T>
G22022C(S:E154Q)> A9760G, T19436A(Orf1b:V1990E), T21810C(S:V83A)
USA/CA-GBW-H20-345-2232/2023|EPI_ISL_18656976|2023-12-09|输出|Taiwan, China|JN.1.4> T18453C>
C2268T(Orf1a:A668V), G6358T(Orf1a: E2031D), A13308G(Orf1a:K4348R), T26182C(Orf3a:Y264H)
@@ -119,15 +119,15 @@ Shanghai/SCDC-XH1218-12_S12/2023|EPI_ISL_18769948|2023-12-09|本土|-|JN.1.1> G1
Shanghai/SCDC-XH1218-13_S13/2023|EPI_ISL_18769949|2023-12-09|本土|-|JN.1.1> G1636T(Orf1a:E457D), C1889T(Orf1a:R542C)
Taiwan/NCKUH-823623131395/2023|EPI_ISL_18819962|2023-12-09|本土|-|JN.1> C25566T>
G17122T(Orf1b:A1219S)> A11342G(Orf1a:I3693V)
Hubei/HCDC-WH3622/2023|EPI_ISL_18797878|2023-12-09|输入|Australia|JN.1.1> C280T> C26455A(E:P71T)
-South Korea/KDCA278107/2023|EPI_ISL_18687609|2023-12-10|输出|China(Mainland)|JN.1.4> T18453C>
C28201T(Orf8:S103L)> T25842C> C26044G(Orf3a:Q218E)> del509-523(Orf1a:del82-86), T24607C
+South Korea/KDCA278107/2023|EPI_ISL_18687609|2023-12-10|输出|China(Mainland)|JN.1.4.5> T25842C>
C26044G(Orf3a:Q218E)> del509-523(Orf1a:del82-86), T24607C
Shanghai/SCDC-HG1211-4172/2023|EPI_ISL_18703847|2023-12-10|输入|Malaysia|JN.1.20> G7646A(Orf1a:G2461S)>
C10228T, del23589-23597(S:del676-678), C25624T(Orf3a:H78Y)
Shanghai/SCDC-HG1211-4173/2023|EPI_ISL_18703848|2023-12-10|输入|UAE|JN.1.4> G25445A(Orf3a:G18D)>
G8179T> C28146T(Orf8:P85S)> C6395T, C6633T(Orf1a:A2123V)
-Shanghai/SCDC-HG1212-4183/2023|EPI_ISL_18703855|2023-12-10|输入|Philippines|JN.1.4> T18453C>
C28201T(Orf8:S103L)> A24604G
+Shanghai/SCDC-HG1212-4183/2023|EPI_ISL_18703855|2023-12-10|输入|Philippines|JN.1.4.5> A24604G
Hubei/HCDC-WH3623/2023|EPI_ISL_18797879|2023-12-10|输入|Singapore|JN.1.5
Fujian/FCDC-XM121306HG/2023|EPI_ISL_18647482|2023-12-11|输入|Australia|BA.2.86.1> C26801T
potential JN.1.4 dropout
Fujian/FCDC-XM121304HG/2023|EPI_ISL_18647485|2023-12-11|输入|Indonesia|BA.2.86.1> C18894T> C7279T
potential JN.1 dropout
Fujian/FCDC-XM121305HG/2023|EPI_ISL_18647486|2023-12-11|输入|Malaysia|BA.2.86.1> C18894T> T8004A(Orf1a:V2580D)
potential JN.1 dropout
-Singapore/R92MR41/2023|EPI_ISL_18651325|2023-12-11|输出|Taiwan, China|JN.1.4> T18453C>
C28201T(Orf3a:S103L)> C28948T> T7434C(Orf1a:F2390S), C16362T, A19212G
+Singapore/R92MR41/2023|EPI_ISL_18651325|2023-12-11|输出|Taiwan, China|JN.1.4.5> C28948T>
T7434C(Orf1a:F2390S), C16362T, A19212G
Shanghai/SCDC-HG1213-4187/2023|EPI_ISL_18769844|2023-12-11|输入|South Korea|JN.1> C1912T>
C10626T(Orf1a:A3454V), A28983G(N:K237R)
Shanghai/SCDC-HG1213-4189/2023|EPI_ISL_18769846|2023-12-11|输入|US|JN.1.19> C23575T> G17280T
Shanghai/SCDC-HG1213-4192/2023|EPI_ISL_18769849|2023-12-11|输入|Germany|JN.1> C829T> C9598T
@@ -135,12 +135,12 @@ Shanghai/SCDC-HG1213-4193/2023|EPI_ISL_18769850|2023-12-11|输入|Australia|JN.2
Shanghai/SCDC-HG1213-4194/2023|EPI_ISL_18769851|2023-12-11|输入|New Zealand|JN.1.1> C9142T>
C12525T> C2232T(Orf1a:A656V), T16692C(Orf1a:T4087I), G18225T(Orf1b:M1586I)
Sichuan/ZGCDC-zgxg502/2023|EPI_ISL_18780194|2023-12-11|本土|-|JN.1.1> C9142T> G2035A
Hubei/HCDC-WH3624/2023|EPI_ISL_18797880|2023-12-11|输入|UK|JN.1> C1612T>
G25699A(Orf3a:A103T)> C5301T(Orf1a:A1679V)> C29679T
-Shanghai/SCDC-HG1214-4195/2023|EPI_ISL_18769852|2023-12-12|输入|Singapore|JN.1.4> T18453C>
C28201T(Orf8:S103L)> C28948T
+Shanghai/SCDC-HG1214-4195/2023|EPI_ISL_18769852|2023-12-12|输入|Singapore|JN.1.4.5> C28948T
Shanghai/SCDC-XG12-15538-2/2023|EPI_ISL_18769932|2023-12-12|本土|-|JN.1> C16329T> C5025T(Orf1a:S1587L)
Yunnan/YNCDC-3571/2023|EPI_ISL_18876970|2023-12-12|本土|-|JN.1
USA/CA-GBW-H20-353-2173/2023|EPI_ISL_18685169|2023-12-13|输出|Taiwan, China|JN.1.1> C9142T> T27772C(Orf7b:L6S)> del509-523(Orf1a:del82-86)
-Singapore/R93MR123/2023|EPI_ISL_18700929|2023-12-13|输出|Taiwan, China|JN.1.4> T18453C>
C28201T(Orf3a:S103L)> C28948T
-Singapore/R93MR28/2023|EPI_ISL_18734102|2023-12-13|输出|China(Mainland)|JN.1.4> T18453C>
C28201T(Orf8:S103L)> A8420G(Orf1a:M2719V)> G448A
+Singapore/R93MR123/2023|EPI_ISL_18700929|2023-12-13|输出|Taiwan, China|JN.1.4.5> C28948T
+Singapore/R93MR28/2023|EPI_ISL_18734102|2023-12-13|输出|China(Mainland)|JN.1.4.5> A8420G(Orf1a:M2719V)> G448A
Shanghai/SCDC-HG1215-4196/2023|EPI_ISL_18769853|2023-12-13|输入|US|JN.1> C1762A(Orf1a:F499L)>
G28134T(Orf8:V81F)> C7528T
Shanghai/SCDC-HG1215-4197/2023|EPI_ISL_18769854|2023-12-13|输入|UK|JN.1> G17562T>
G21616'T> T699C(Orf1a:L145S), A4452G(Orf1a:K1396R), G25654T(Orf3:V88L)
Shanghai/SCDC-HG1215-4198/2023|EPI_ISL_18769855|2023-12-13|输入|UK|JN.1.1> C9142T
@@ -151,9 +151,9 @@ USA/WA-GBW-H20-345-3230/2023|EPI_ISL_18685166|2023-12-14|输出|China(Mainland)|
Shanghai/SCDC-HG1216-4203/2023|EPI_ISL_18769860|2023-12-14|输入|South Korea|JN.1.1> C9142T>
C9042T(Orf1a:S2926F)> G2659A, T14203G(Orf1b:S246A)
Shanghai/SCDC-HG1216-4204/2023|EPI_ISL_18769861|2023-12-14|输入|Taiwan, China|JN.1> C17676T> G22111T(S:Q183H)
Shanghai/SCDC-HG1216-4206/2023|EPI_ISL_18769863|2023-12-14|输入|Turkey|JN.1> C26625T> T13779C
-Shanghai/SCDC-HG1216-4207/2023|EPI_ISL_18769864|2023-12-14|输入|Thailand|JN.1.4> T18453C>
C28201T(Orf8:S103L)> A8420G(Orf1a:M2719V)> T20631C
+Shanghai/SCDC-HG1216-4207/2023|EPI_ISL_18769864|2023-12-14|输入|Thailand|JN.1.4.5> A8420G(Orf1a:M2719V)> T20631C
Shanghai/SCDC-XG12-15541-2/2023|EPI_ISL_18769935|2023-12-14|本土|-|JN.1.4> T18453C>
A29799G> C10582T> C2062T, T28879C
-Shanghai/SCDC-XH1221-4_S10/2023|EPI_ISL_18769958|2023-12-14|本土|-|JN.1.4> T18453C>
C28201T(Orf8:S103L)> C28948T> C2485T> C13264T> C2401T
+Shanghai/SCDC-XH1221-4_S10/2023|EPI_ISL_18769958|2023-12-14|本土|-|JN.1.4.5> C28948T> C2485T> C13264T> C2401T
Yunnan/YNCDC-3585/2023|EPI_ISL_18876984|2023-12-14|本土|-|JN.1> G1463A(Orf1a:G400S)> T25586C(Orf3a:L65P)
Fujian/FCDC-XM121904HG/2023|EPI_ISL_18686288|2023-12-15|输入|Italy|JN.1
Shanghai/SCDC-HG1217-4209/2023|EPI_ISL_18769866|2023-12-15|输入|Italy|JN.1> C1060T> T16605C
@@ -162,18 +162,18 @@ Shanghai/SCDC-HG1217-4211/2023|EPI_ISL_18769868|2023-12-15|输入|Singapore|JN.1
Shanghai/SCDC-HG1217-4212/2023|EPI_ISL_18769869|2023-12-15|输入|UK|JN.1.1.1> G15906T(Orf1b:Q813H)> G12769T
Shanghai/SCDC-HG1217-4213/2023|EPI_ISL_18769870|2023-12-15|输入|Singapore|JN.1.5> T29512C
Shanghai/SCDC-HG1217-4214/2023|EPI_ISL_18769871|2023-12-15|输入|Netherlands|JN.1> G10835A(Orf1a:V3524I)
-Shanghai/SCDC-HG1217-4215/2023|EPI_ISL_18769872|2023-12-15|输入|Singapore|JN.1.4> T18453C>
C28201T(Orf8:S103L)> C28948T> C18646T(Orf1b:P1727S)> C23191T
+Shanghai/SCDC-HG1217-4215/2023|EPI_ISL_18769872|2023-12-15|输入|Singapore|JN.1.4.5> C28948T> C18646T(Orf1b:P1727S)> C23191T
Shanghai/SCDC-HG1217-4216/2023|EPI_ISL_18769873|2023-12-15|输入|Singapore|JN.1.5> A12004G
-Shanghai/SCDC-XH1221-2_S8/2023|EPI_ISL_18769956|2023-12-15|本土|-|JN.1.4> T18453C>
C28201T(Orf8:S103L)> C28948T> C19018T(Orf1b:P1851S), T23428G> T17065C(Orf1b:Y1200H), T29470C
+Shanghai/SCDC-XH1221-2_S8/2023|EPI_ISL_18769956|2023-12-15|本土|-|JN.1.4.5> C28948T>
C19018T(Orf1b:P1851S), T23428G> T17065C(Orf1b:Y1200H), T29470C
Fujian/FCDC-XM121903HG/2023|EPI_ISL_18686287|2023-12-15|输入|Singapore|JN.1.5> T6724C> G17523T(Orf1b:M1352I)
Singapore/R93MR97/2023|EPI_ISL_18734151|2023-12-15|输出|Taiwan, China|JN.1> A28795G> C1218T(Orf1a:S318L)
Taiwan/NCKUH-823623127875/2023|EPI_ISL_18809366|2023-12-15|本土|-|JN.10> T13177C
-Fujian/FCDC-FZ15293816/2023|EPI_ISL_18686285|2023-12-16|输入|Taiwan, China|JN.1.4> T18453C>
C28201T(Orf8:S103L)> A8420G(Orf1a:M2719V)> G12566A(Orf1a:V4101T), G26167T(Orf3a:V259L)
+Fujian/FCDC-FZ15293816/2023|EPI_ISL_18686285|2023-12-16|输入|Taiwan, China|JN.1.4.5> A8420G(Orf1a:M2719V)>
G12566A(Orf1a:V4101T), G26167T(Orf3a:V259L)
Shanghai/SCDC-HG1218-4218/2023|EPI_ISL_18769874|2023-12-16|输入|Hong Kong, China|JN.1> C829T>
A12860G(Orf1a:S4199G)> del509-523(Orf1a:del82-86), G23120T(S:A520S), del27702(Orf7a:fs103)
Yunnan/YNCDC-3564/2023|EPI_ISL_18876963|2023-12-16|本土|-|JN.1.9>
A12678G(Orf1a:K4138R)> C2509T, C16329T, C24734T(S:H1058Y)> G3251A(Orf1a:D996N)
Yunnan/YNCDC-3565/2023|EPI_ISL_18876964|2023-12-16|本土|-|JN.1.18> A6265G
USA/WA-GBW-H20-344-7334/2023|EPI_ISL_18709969|2023-12-17|输出|China(Mainland)|JN.1> C829T> C9598T
-Shanghai/SCDC-HG1219-4221/2023|EPI_ISL_18769876|2023-12-17|输入|Philippines|JN.1.4> T18453C>
C28201T(Orf8:S103L)> C4999T, C8299T, G16710A, C23609T(S:R683W)
+Shanghai/SCDC-HG1219-4221/2023|EPI_ISL_18769876|2023-12-17|输入|Philippines|JN.1.4.5>
C4999T, C8299T, G16710A, C23609T(S:R683W)
Shanghai/SCDC-HG1219-4223/2023|EPI_ISL_18769877|2023-12-17|输入|Philippines|JN.1.1> C8836T
Shanghai/SCDC-HG1219-4225/2023|EPI_ISL_18769878|2023-12-17|输入|Russia|JN.1> A6705G(Orf1a:N2147S)> T17136C
Shanghai/SCDC-HG1219-4227/2023|EPI_ISL_18769880|2023-12-17|输入|Israel|JN.1>
G5594A(Orf1a:E1777K), C15183T, G25252C, C28663T
@@ -220,25 +220,25 @@ Liaoning/LNCDC-504-1/2023|EPI_ISL_18758223|2023-12-20|本土|-| A7486G, T15411C
Sichuan/CDCDC--19-CX3691/2023|EPI_ISL_18780177|2023-12-20|本土|-|JN.1.1> C9142T>
G2035A> C19263T, C21304A(Orf1b:R2613N), G21305A(Orf1b:R2613N)
Liaoning/LNCDC-2024-002-1/2023|EPI_ISL_18797838|2023-12-20|本土|-|JN.1.1> C9142T>
G21238A, C28807T
-Hubei/HCDC-JZ3620/2023|EPI_ISL_18797865|2023-12-20|输入|Singapore|JN.1.4> T18453C>
C28201T(Orf8:S103L)> C28948T> C12439T
+Hubei/HCDC-JZ3620/2023|EPI_ISL_18797865|2023-12-20|输入|Singapore|JN.1.4.5> C28948T> C12439T
Fujian/FCDC-XM122706HG/2023|EPI_ISL_18711336|2023-12-21|输入|Malaysia|JN.1> C19011T>
C9836T> C13170T(Orf1a:T4302I)
Shanghai/SCDC-XH1228-5_S5/2023|EPI_ISL_18769941|2023-12-21|本土|-|JN.1.1> G1636T(Orf1a:E457D), C1889T(Orf1a:R542C)
Shanghai/SCDC-XH1228-7_S7/2023|EPI_ISL_18769943|2023-12-21|本土|-|JN.1.1> G1636T(Orf1a:E457D), C1889T(Orf1a:R542C)
-Singapore/R95MR54/2023|EPI_ISL_18734288|2023-12-22|输出|China(Mainland)|JN.1.4> T18453C>
C28201T(Orf8:S103L)> A8420G(Orf1a:M2719V)> G29868T
-Singapore/R95MR56/2023|EPI_ISL_18734408|2023-12-22|输出|Taiwan, China|JN.1.4> T18453C>
C28201T(Orf8:S103L)> C28948T> C19662T
+Singapore/R95MR54/2023|EPI_ISL_18734288|2023-12-22|输出|China(Mainland)|JN.1.4.5> A8420G(Orf1a:M2719V)> G29868T
+Singapore/R95MR56/2023|EPI_ISL_18734408|2023-12-22|输出|Taiwan, China|JN.1.4.5> C28948T> C19662T
Shanghai/SCDC-XH1228-6_S6/2023|EPI_ISL_18769942|2023-12-23|本土|-|JN.1.1> G1636T(Orf1a:E457D), C1889T(Orf1a:R542C)
Hubei/HCDC-WH3628/2023|EPI_ISL_18797884|2023-12-23|输入|UK|JN.1>T18471C> C7732T
Yunnan/YNCDC-3595/2023|EPI_ISL_18876994|2023-12-23|本土|-|JN.1> T168C
Hong Kong/VB23253637/2023|EPI_ISL_18760244|2023-12-24|本土|-|JN.1> G5704T(Orf1a:Q1813H), G28903T(N:M210I)>
C27630T
Fujian/FCDC-XM122708HG/2023|EPI_ISL_18711338|2023-12-25|输入|Philippines|JN.1.1> C9142T
Hong Kong/VB23255571/2023|EPI_ISL_18760245|2023-12-25|本土|-|JN.1> G25183T>
C3261T, C25624T, C27741T, del28254(Orf8:fs121), G28509T(Orf9b:V76F)
-Hubei/HCDC-JZ3630/2023|EPI_ISL_18797866|2023-12-25|输入|Singapore|JN.1.4> T18453C>
C28201T(Orf8:S103L)> C28948T> C12439T
+Hubei/HCDC-JZ3630/2023|EPI_ISL_18797866|2023-12-25|输入|Singapore|JN.1.4.5> C28948T> C12439T
Hubei/HCDC-WH3629/2023|EPI_ISL_18797885|2023-12-25|输入|USA|JN.1.18> G16269A>
A29700G> C7765T
Hubei/HCDC-WH3631/2023|EPI_ISL_18797886|2023-12-25|本土|-|JN.11> C16887T>
G22022C, T26705C
Liaoning/LNCDC-2024-013-1/2023|EPI_ISL_18805089|2023-12-25|本土|-|JN.1.1> C9142T>
G21238A, C28807T
Yunnan/YNCDC-3599/2023|EPI_ISL_18876998|2023-12-25|本土|-|JN.1.1> C9142T>
A6551G(Orf1a:M2096V)> C5100T(Orf1a:S1612L)> T28516C(Orf9b:M78T)
Yunnan/YNCDC-3600/2023|EPI_ISL_18876999|2023-12-25|本土|-|BA.2.86.1> C29614T>
C23601T(S:S680F)> T19893A(Orf1b:D2142E)> C2507T(Orf1a:P748S), A10874G(Orf1a:N3537D), C17676T, C28087T(Orf8:A65V)
-Yunnan/YNCDC-3601/2023|EPI_ISL_18877000|2023-12-25|本土|-|JN.1.4> T18453C>
C28201T(Orf8:S103L)> C28948T> C28344T(N:T24I)
+Yunnan/YNCDC-3601/2023|EPI_ISL_18877000|2023-12-25|本土|-|JN.1.4.5> C28948T> C28344T(N:T24I)
Yunnan/YNCDC-3612/2023|EPI_ISL_18877011|2023-12-25|本土|-|JN.1> T18471C>
C9857T> C29077T
Yunnan/YNCDC-3613/2023|EPI_ISL_18877012|2023-12-25|本土|-|JN.1> C25624T(Orf3a:H78Y)> C18512T(Orf1b:P1482L)
Fujian/FCDC-XM122709HG/2023|EPI_ISL_18711339|2023-12-26|输入|France|BA.2.86.4> A8633G(Orf1a:I2790V)>
C17569T(Orf1b:P1368S), G24776C(S:E1072Q), G28703C(N:D144H), C29769T
@@ -256,10 +256,10 @@ Yunnan/YNCDC-3617/2023|EPI_ISL_18877016|2023-12-26|本土|-|JN
USA/CA-GBW-H20-353-8899/2023|EPI_ISL_18731558|2023-12-27|输出|Taiwan, China|JN.1.1> C9142T>
G7091A(Orf1a:V2276I)
Yunnan/YNCDC-3604/2023|EPI_ISL_18877003|2023-12-27|本土|-|JN.1> G16269A> C26645T
USA/CA-GBW-H20-346-1799/2023|EPI_ISL_18731576|2023-12-28|输出|Taiwan, China|XDD> C13011T(Orf1a:T4249I)>
C18162T, T18900C
-Singapore/R2MQ85/2023|EPI_ISL_18770899|2023-12-28|输出|Hong Kong, China|JN.1.4> T18453C>
C28201T(Orf8:S103L)> C28948T> A12461G(Orf1a:T4066A)
+Singapore/R2MQ85/2023|EPI_ISL_18770899|2023-12-28|输出|Hong Kong, China|JN.1.4.5> C28948T> A12461G(Orf1a:T4066A)
Hubei/HCDC-WH3633/2023|EPI_ISL_18797888|2023-12-28|输入|UK|JN.1> G25429T>
C19186T> C18687T> T4608C(Orf1a:M1448T), C24553T> C2062T> T10999C> A17631G> C1385T(Orf1a:H374Y)> T28114C(Orf8:I74T)> T25429G
Hubei/HCDC-WH3634/2023|EPI_ISL_18797889|2023-12-28|输入|Malaysia|JN.1> G2527A>
C24863T(S:H1101Y), C25521T
-Singapore/R1MQ31/2023|EPI_ISL_18726150|2023-12-29|输出|Taiwan, China|JN.1.4> T18453C>
C28201T(Orf8:S103L)> C28948T> C4940T(Orf1a:L1559F)
+Singapore/R1MQ31/2023|EPI_ISL_18726150|2023-12-29|输出|Taiwan, China|JN.1.4.5> C28948T> C4940T(Orf1a:L1559F)
Fujian/FCDC-XM123003HG/2023|EPI_ISL_18731669|2023-12-29|输入|Indonesia|JN.1.1> C9142T>
A29412T(N:Q380L)> G347A(Orf1a:V28I)> C7764T(Orf1a:S2500F), C13356T(Orf1a:T4364I)
Fujian/FCDC-XM123005HG/2023|EPI_ISL_18731670|2023-12-29|输入|Australia|JN.1.1> C10604T(Orf1a:P3447S)>
C13264T> G8075A(Orf1a:V2604I)
USA/CA-GBW-H20-343-7867/2023|EPI_ISL_18775801|2023-12-29|输出|Taiwan, China|JN.1.1> T20526C> A6154G
@@ -278,22 +278,22 @@ Hubei/HCDC-WH3635/2023|EPI_ISL_18797890|2023-12-30|输入|USA|
Hubei/HCDC-WH3636/2023|EPI_ISL_18797891|2023-12-30|输入|USA|JN.1> T18738A(Orf1b:F1757L)>
A9701G(Orf1a:I3146V)> T27863C
Yunnan/YNCDC-3605/2023|EPI_ISL_18877004|2023-12-30|本土|-|JN.1>
T168A, T17241A, C20790T
Taiwan/CDC-F89722/2023|EPI_ISL_18866129|2023-12-30|本土|-|JN.1>
C8994T(Orf1a:T2910I), T15335C(Orf1b:I623T), G27948T(Orf8:E19*)
-Taiwan/CDC-F89723/2023|EPI_ISL_18866130|2023-12-30|本土|-|JN.1.4> T18453C>
C28201T(Orf8:S103L)> C28948T> C22227T(S:A222V)> C3717T(Orf1a:A1151V), G5810A(Orf1a:D1849N), A10915G, C15273T, G29511T(N:R413L)
-USA/CA-GBW-H20-356-4176/2023|EPI_ISL_18775818|2023-12-31|输出|Taiwan, China|JN.1.4> T18453C>
C28201T(Orf8:S103L)> A8420G(Orf1a:M2719V)> C1625T(Orf1a:L454F), C5025T(Orf1a:S1587L), T15801C, A17805G, A23928T(S:Y789F)
+Taiwan/CDC-F89723/2023|EPI_ISL_18866130|2023-12-30|本土|-|JN.1.4.5> C28948T>
C22227T(S:A222V)> C3717T(Orf1a:A1151V), G5810A(Orf1a:D1849N), A10915G, C15273T, G29511T(N:R413L)
+USA/CA-GBW-H20-356-4176/2023|EPI_ISL_18775818|2023-12-31|输出|Taiwan, China|JN.1.4.5> A8420G(Orf1a:M2719V)>
C1625T(Orf1a:L454F), C5025T(Orf1a:S1587L), T15801C, A17805G, A23928T(S:Y789F)
USA/CA-GBW-H20-356-2443/2023|EPI_ISL_18775874|2023-12-31|输出|Taiwan, China|JN.1.6> A610G, C25162T
Taiwan/CDC-F90588/2023|EPI_ISL_18866133|2023-12-31|本土|-|JN.1> C673T
-Taiwan/CDC-F90594/2023|EPI_ISL_18866134|2023-12-31|本土|-|JN.1.4> T18453C>
C28201T(Orf8:S103L)> C28948T> C5144T> G463A, C9112T, G27798T(Orf7b:A15S)
+Taiwan/CDC-F90594/2023|EPI_ISL_18866134|2023-12-31|本土|-|JN.1.4.5> C28948T> C5144T> G463A, C9112T, G27798T(Orf7b:A15S)
Taiwan/CDC-W35160/2023|EPI_ISL_18866159|2023-12-31|输入|Malaysia|JN.1
-Taiwan/CDC-W35172/2023|EPI_ISL_18866161|2023-12-31|输入|Malaysia|JN.1.4> T18453C>
C28201T(Orf8:S103L)> C28948T> A3234T(Orf1a:Q990L)> A5133G(Orf1a:N1623S), C9286T
+Taiwan/CDC-W35172/2023|EPI_ISL_18866161|2023-12-31|输入|Malaysia|JN.1.4.5> C28948T> A3234T(Orf1a:Q990L)> A5133G(Orf1a:N1623S), C9286T
Anhui/SZCDC-FX1/2024|EPI_ISL_18853571|2024-01|本土|-|JN.1> C24904T>
C21654T> C6070T
Anhui/SZCDC-FX3/2024|EPI_ISL_18853572|2024-01|本土|-|JN.1> C24904T>
C21654T> T19584C, T27264C, T29729G
Anhui/SZCDC-FX4/2024|EPI_ISL_18853573|2024-01|本土|-|JN.1> C24904T>
C21654T> G22344T(S:G261V)
Anhui/SZCDC-FX6/2024|EPI_ISL_18853575|2024-01|本土|-|JN.1> C24904T>
C21654T> G22344T(S:G261V)
Fujian/FCDC-XM010312HG/2024|EPI_ISL_18792238|2024-01-01|输入|Singapore|JN.1.1> C9142T>
C717T(Orf1a:T151I), G19777A(Orf1b:V2104I), A27599G(Orf7a:D69G)
Singapore/R1MQ197/2024|EPI_ISL_18726198|2024-01-02|输出|China(Mainland)|JN.1
-Singapore/R1MQ145/2024|EPI_ISL_18726227|2024-01-02|输出|Taiwan, China|JN.1.4> T18453C>
C28201T(Orf8:S103L)> C28948T> T550C, C29200T
+Singapore/R1MQ145/2024|EPI_ISL_18726227|2024-01-02|输出|Taiwan, China|JN.1.4.5>
C28948T> T550C, C29200T
Hong Kong/VB24003606/2024|EPI_ISL_18760250|2024-01-02|本土|-|JN.1> G5704T(Orf1a:Q1813H), G28903T(N:M210I)
-Fujian/FCDC-QZ01S001/2024|EPI_ISL_18792231|2024-01-02|输入|Malaysia|JN.1.4> T18453C>
C28201T(Orf8:S103L)> C28948T> A4447G, C26133T
+Fujian/FCDC-QZ01S001/2024|EPI_ISL_18792231|2024-01-02|输入|Malaysia|JN.1.4.5> C28948T>
A4447G, C26133T
Fujian/FCDC-QZ01S002/2024|EPI_ISL_18792232|2024-01-02|输入|Philippines|JN.1.1> C9142T>
C29274T(N:T334I)> C16323T
Hubei/HCDC-WH3638/2024|EPI_ISL_18797893|2024-01-02|输入|Thailand|JN.1> A13712G(Orf1b:K82R)>
G7850T(Orf1a:A2529S)> T4804G(Orf1a:D1513E)> C4084T, C23077T
Henan/SMXCDC011302/2024|EPI_ISL_18819508|2024-01-02|本土|-|BA.2.86> C9226T>
G17562T, C18804T, C27563T(Orf7a:T57I)> C15279T, C18744T
@@ -307,11 +307,11 @@ Yunnan/YNCDC-0001/2024|EPI_ISL_18876906|2024-01-02|本土|-|JN
Hong Kong/VB24005289/2024|EPI_ISL_18760252|2024-01-03|本土|-|JN.1> G5704T(Orf1a:Q1813H), G28903T(N:M210I)
Hong Kong/VB24004297/2024|EPI_ISL_18760251|2024-01-03|本土|-|JN.1.1> C4456T>
C28185T(Orf8:L98F)> C1102T, A6355G> C12043T
Taiwan/CDC-F90622/2024|EPI_ISL_18866135|2024-01-03|本土|-|JN.1.5> T10330C, G28878C(N:S202T)
-Taiwan/CDC-W35260/2024|EPI_ISL_18866138|2024-01-03|输入|Vietnam|JN.1.4> T18453C>
C28201T(Orf8:S103L)> C28453T(Orf9b:A57V)> C14352T
+Taiwan/CDC-W35260/2024|EPI_ISL_18866138|2024-01-03|输入|Vietnam|JN.1.4.5> C28453T(Orf9b:A57V)> C14352T
Yunnan/YNCDC-0006/2024|EPI_ISL_18876911|2024-01-03|本土|-|JN.1> T18471C>
C9857T> C29077T
Yunnan/YNCDC-0007/2024|EPI_ISL_18876912|2024-01-03|本土|-|JN.1> T18471C>
C9857T> C29077T> G19771A(Orf1b:V2102I)
Hong Kong/VB24006024/2024|EPI_ISL_18760253|2024-01-04|本土|-|JN.1> C19011T>
G1729A, C2137T, C29762T
-Hong Kong/VB24006739/2024|EPI_ISL_18760254|2024-01-04|本土|-|JN.1.4> T18453C>
C28201T(Orf8:S103L)> C28948T> C26801T> C7420T
+Hong Kong/VB24006739/2024|EPI_ISL_18760254|2024-01-04|本土|-|JN.1.4.5> C28948T>
C26801T> C7420T
USA/CA-GBW-H20-356-5082/2024|EPI_ISL_18775819|2024-01-04|输出|Taiwan, China|JN.1.4> T18453C> del6655-6681(Orf1a:del2131-2139)
USA/CA-GBW-H20-340-6014/2024|EPI_ISL_18775830|2024-01-04|输出|Taiwan, China|JN.1.1> C9142T>
A29412T(N:Q380L)> C6807T(Orf1a:T2181I), C23185T, T25025C(S:Y1155H)
USA/CA-GBW-H20-356-8302/2024|EPI_ISL_18775837|2024-01-04|输出|Taiwan, China|JN.1.1> C9142T> T25723C
@@ -330,12 +330,12 @@ Hong Kong/VB24008814/2024|EPI_ISL_18760255|2024-01-06|本土|-|BA.2.86.1> T11614C>
C17288T(Orf1b:T1274I)> C6629T(Orf1a:L2122F), T24769A> del509-523(Orf1a:del82-86)> T3905G(Orf1a:F1214V), T8356C, C25324T, C25714T(Orf3a:L108F)
Heilongjiang/HLJCDC-0029/2024|EPI_ISL_18857569|2024-01-06|本土|-|JN.1> C25566T>
C4570T> C6941T> T21738C(S:F59S)
Taiwan/CDC-W35342/2024|EPI_ISL_18866142|2024-01-06|输入|Malaysia|JN.1.5> C29627T(Orf10:R24C)
-Hong_Kong/VB24008555/2024|EPI_ISL_18872883|2024-01-06|本土|-|JN.1.4> T18453C>
C28201T(Orf8:S103L)> A21417G> A19407G> C22624T> G2183A(Orf1a:E640K)
+Hong_Kong/VB24008555/2024|EPI_ISL_18872883|2024-01-06|本土|-|JN.1.4.5> A21417G>
A19407G> C22624T> G2183A(Orf1a:E640K)
Hong_Kong/VB24008557/2024|EPI_ISL_18872884|2024-01-06|本土|-|JN.1> A13712G(Orf1b:K82R)>
G7850T(Orf1a:A2529S)> T4804G(Orf1a:D1513E)
USA/NY-GBW-H20-332-7981/2024|EPI_ISL_18796671|2024-01-07|输出|Hong Kong, China|JN.1> A13712G(Orf1b:K82R)>
G7850T(Orf1a:A2529S)> T4804G(Orf1a:D1513E)
Taiwan/CDC-F90660/2024|EPI_ISL_18838502|2024-01-07|本土|-|JN.1.5>
C4686T(Orf1a:T1474I), A7455G(Orf1a:Y2397C), A28877T, G28878C
-Taiwan/CDC-W35360/2024|EPI_ISL_18838596|2024-01-07|输入|Thailand|JN.1.4> T18453C>
C28201T(Orf8:S103L)> A21417G> G12378A(Orf1a:R4038K), C23601A(S:S680Y)
-Taiwan/CDC-W35365/2024|EPI_ISL_18838597|2024-01-07|输入|Japan|JN.1.4> T18453C>
C28201T(Orf8:S103L)> A6081T(Orf1a:D1939V), A8420G(Orf1a:M2719V)
+Taiwan/CDC-W35360/2024|EPI_ISL_18838596|2024-01-07|输入|Thailand|JN.1.4.5> A21417G>
G12378A(Orf1a:R4038K), C23601A(S:S680Y)
+Taiwan/CDC-W35365/2024|EPI_ISL_18838597|2024-01-07|输入|Japan|JN.1.4.5> A6081T(Orf1a:D1939V), A8420G(Orf1a:M2719V)
Taiwan/CDC-W35350/2024|EPI_ISL_18866143|2024-01-07|输入|Japan|JN.1.1>
G14023A(Orf1b:A186T), T27257A(Orf6:M19K), G27258A(Orf6:M19K)> A12413G(Orf1a:N4050D)
Yunnan/YNCDC-0003/2024|EPI_ISL_18876908|2024-01-07|本土|-|JN.1> A20262G> T17250C
Yunnan/YNCDC-0004/2024|EPI_ISL_18876909|2024-01-07|本土|-|JN.1>
C4084T> C17491T(Orf1b:P1342S), G20663A(Orf1b:S2399N)
@@ -349,7 +349,7 @@ Yunnan/YNCDC-0024/2024|EPI_ISL_18876929|2024-01-08|本土|-|JN
Taiwan/NCKUH-823624002378/2024|EPI_ISL_18819965|2024-01-09|本土|-|JN.1> C25566T>
G17122T(Orf1b:A1219S)> A11342G(Orf1a:I3693V)> C20594T(Orf1b:T2376I), T21740C(S:S60P), G22289T(S:A243S)
Taiwan/CDC-F90789/2024|EPI_ISL_18838507|2024-01-09|本土|-|JN.1.5> G11417T(Orf1a:V3718F)>
C13335T(Orf1a:A4357V), T28208C> G3483A(Orf1a:G1073E)
Taiwan/CDC-F90791/2024|EPI_ISL_18838508|2024-01-09|本土|-|JN.2> C5850T(Orf1a:P1862L)>
G14122A(Orf1a:G219S)> C9559T> G3774A(Orf1a:R1170H)> T27134C> C1457T(Orf1a:R398C), C3267T(Orf1a:T1001I), C4438T, C8660T(Orf1a:H2799Y), A13559G(Orf1b:D31G), T27814G(Orf7b:L20R)
-Taiwan/CDC-F90792/2024|EPI_ISL_18838509|2024-01-09|本土|-|JN.1.4> T18453C>
C28201T(Orf8:S103L)> C28948T> G2527A, C12747A(Orf1a:T4161N), C27059T
+Taiwan/CDC-F90792/2024|EPI_ISL_18838509|2024-01-09|本土|-|JN.1.4.5> C28948T>
G2527A, C12747A(Orf1a:T4161N), C27059T
Taiwan/CDC-W35379/2024|EPI_ISL_18838598|2024-01-09|输入|South Korea|JN.1> G14030A
Taiwan/CDC-W35397/2024|EPI_ISL_18838599|2024-01-09|输入|Vietnam|JN.1> C25566T>
G17122T(Orf1b:A1219S)> A11947G> C5986T> G3530A(Orf1a:D1089N), C5826T(Orf1a:T1854I), C8140T
Liaoning/LNCDC-025-2/2024|EPI_ISL_18853625|2024-01-09|本土|-|JN.1.1.5>
C4423T, C22311A(S:T250N), G28396A(Orf9b:G38D)
@@ -357,7 +357,7 @@ Liaoning/LNCDC-025-3/2024|EPI_ISL_18853626|2024-01-09|本土|-|JN.1> C1385T(Orf1
Liaoning/LNCDC-027/2024|EPI_ISL_18853631|2024-01-09|本土|-|JN.1.28> T25171A>
A6518G(Orf1a:K2085E), T23377C(S:S940F)> C24381T, C28775T(N:P168S)
Heilongjiang/HLJCDC-0025/2024|EPI_ISL_18857565|2024-01-09|本土|-|JN.1.1> C9142T>
C23673T(S:S704L)> C20235T
Heilongjiang/HLJCDC-0027/2024|EPI_ISL_18857567|2024-01-09|本土|-|JN.1> del28254(Orf8:fs122)
-Hong_Kong/VB24010875/2024|EPI_ISL_18872885|2024-01-09|本土|-|JN.1.4> T18453C>
C28201T(Orf8:S103L)> A21417G> A19407G> C18267T
+Hong_Kong/VB24010875/2024|EPI_ISL_18872885|2024-01-09|本土|-|JN.1.4.5> A21417G>
A19407G> C18267T
Hong_Kong/VB24011648/2024|EPI_ISL_18872886|2024-01-09|本土|-|JN.1> C9246T(Orf1a:A2994V)> C1973T
Singapore/R3MQ54/2024|EPI_ISL_18771091|2024-01-10|输出|Hong Kong, China|XDQ> T22846C>
T8670G(Orf1a:F2802C), A23021G(S:N487D)> G210A, G2331T(Orf1a:C689F), C6310T
USA/CA-GBW-H20-358-5433/2024|EPI_ISL_18796431|2024-01-10|输出|Taiwan, China|JN.1.6> T18402C
@@ -369,13 +369,13 @@ Taiwan/CDC-W35403/2024|EPI_ISL_18838600|2024-01-10|输入|Thailand|JN.1.1> C9142T>
G21238A(Orf1b:V2591I)> A27315C(Orf6:K38N), T27835C(Orf7b:I27T)
Yunnan/YNCDC-0025/2024|EPI_ISL_18876930|2024-01-10|本土|-|JN.1> T18471C>
C9857T> C29077T
Singapore/R4MQ34/2024|EPI_ISL_18806626|2024-01-11|输出|Taiwan, China|JN.1> T10771C>
T5074C, C21855T(S:S98F)
-Singapore/R4MQ37/2024|EPI_ISL_18806656|2024-01-11|输出|China(Mainland)|JN.1.4> T18453C>
C28201T(Orf8:S103L)> C28948T> C13517T(Orf1b:T17I)> A11140G, C18555T, G26153T(Orf3a:G254V)
+Singapore/R4MQ37/2024|EPI_ISL_18806656|2024-01-11|输出|China(Mainland)|JN.1.4.5> C28948T>
C13517T(Orf1b:T17I)> A11140G, C18555T, G26153T(Orf3a:G254V)
Taiwan/CDC-W35420/2024|EPI_ISL_18838511|2024-01-11|输入|Japan|JN.1.1> C9142T
Hubei/HCDC-WH3648/2024|EPI_ISL_18853591|2024-01-11|输入|Thailand|JN.1> T18471C
Hubei/HCDC-XY3664/2024|EPI_ISL_18853606|2024-01-11|本土|-|JN.1> C19029T>
G2782T, G8939A(Orf1a:V2892I), C22350T(S:A263V), C27881T
Hubei/HCDC-WH3644/2024|EPI_ISL_18797894|2024-01-12|输入|Thailand|JN.1> C7844T>
C3225T(Orf1a:T987I), C5944T, G6647A(Orf1a:A2128T), A14960T(Orf1a:N498I)
Hubei/HCDC-WH3645/2024|EPI_ISL_18797895|2024-01-12|输入|Malaysia|JN.1.5> C6026T(Orf1a:P1921S)>
C6606T(Orf1a:S2114F), C10039A, A14960T(Orf1b:N498I), C29445T(N:T391I)
-Taiwan/CDC-F90690/2024|EPI_ISL_18838506|2024-01-12|输入|China(Mainland)|JN.1.4> T18453C>
C28201T(Orf8:S103L)> A21417G> T5619C(Orf1a:I1785T)> G3418A, C5477T(Orf1a:H1738Y), A18165G
+Taiwan/CDC-F90690/2024|EPI_ISL_18838506|2024-01-12|输入|China(Mainland)|JN.1.4.5> A21417G>
T5619C(Orf1a:I1785T)> G3418A, C5477T(Orf1a:H1738Y), A18165G
Taiwan/CDC-W35441/2024|EPI_ISL_18838512|2024-01-12|输入|Japan|JN.1> C11767T> C26894T
Hubei/HCDC-WH3656/2024|EPI_ISL_18853597|2024-01-12|本土|-|JN.1.5> C29200A
Yunnan/YNCDC-0020/2024|EPI_ISL_18876925|2024-01-12|本土|-|JN.1> C19011T>
T7633C, C11681T, C11785T, C29347T
@@ -425,7 +425,7 @@ Hong_Kong/VB24019583/2024|EPI_ISL_18872889|2024-01-18|本土|-|JN.1> A10323G(Orf
Hong_Kong/VB24020311/2024|EPI_ISL_18872890|2024-01-18|本土|-|JN.1.20> C3159T(Orf1a:T965I)>
C18705T> C3241T, del27373(Orf6:fs58)
USA/WA-GBW-H20-355-3106/2024|EPI_ISL_18840250|2024-01-19|输出|China(Mainland)|JN.1>
C3162T(Orf1a:S966F), T27279C, T29185C
Singapore/R6MQ130/2024|EPI_ISL_18831222|2024-01-19|输出|Taiwan, China|JN.1.4> C7923T(Orf1a:S2553F), C25708T(Orf3a:L106F)
-Singapore/R6MQ128/2024|EPI_ISL_18831223|2024-01-19|输出|Hong Kong, China|JN.1.4> T18453C>
C28201T(Orf8:S103L)> A21417G> A19407G> C1348T, G1696A, G16416T
+Singapore/R6MQ128/2024|EPI_ISL_18831223|2024-01-19|输出|Hong Kong, China|JN.1.4.5> A21417G>
A19407G> C1348T, G1696A, G16416T
Hubei/HCDC-WH3679/2024|EPI_ISL_18853602|2024-01-19|本土|-|JN.1> C20233T(Orf1b:P2256S)> G5294A(Orf1a:A1677T)
Liaoning/LNCDC-043-1/2024|EPI_ISL_18876882|2024-01-19|本土|-|JN.1.1> C9142T>
C20178T> G12070T> A2871G(Orf1a:N869S), A15779G(Orf1b:K771R), G27930A(Orf8:V13I)
Hubei/HCDC-WH3674/2024|EPI_ISL_18853598|2024-01-20|输入|Japan|BA.2.86.3> T17664C> C26907T
@@ -465,7 +465,7 @@ Hong_Kong/VB24027804/2024|EPI_ISL_18872893|2024-01-26|本土|-|JN.1.1> C9142T>
C20178T> G12070T> A2871G(Orf1a:N869S), A15779G(Orf1b:K771R), G27930A(Orf8:V13I)
Hong_Kong/VB24028773/2024|EPI_ISL_18872894|2024-01-27|本土|-|JN.1>
G509T(Orf1a:G82C), G1126A, G4162A, C25521T, C25658T(Orf3a:T89I)
Hong_Kong/VB24028787/2024|EPI_ISL_18872895|2024-01-27|本土|-|JN.1>
G509T(Orf1a:G82C), G1126A, G4162A, C25521T, C25658T(Orf3a:T89I)> G26660T(M:L46F)
-Liaoning/LNCDC-049-2/2024|EPI_ISL_18876899|2024-01-27|本土|-|JN.1.4> T18453C>
C28201T(Orf8:S103L)> C28948T
+Liaoning/LNCDC-049-2/2024|EPI_ISL_18876899|2024-01-27|本土|-|JN.1.4.5> C28948T
USA/CA-GBW-H20-357-4202/2024|EPI_ISL_18879460|2024-01-28|输出|Taiwan, China|JN.1.1> C12085T>
T23542C, C27630T
USA/CA-GBW-H20-357-3914/2024|EPI_ISL_18879505|2024-01-28|输出|Taiwan, China|JN.1.5> C4897T, C8964T(Orf1a:S2900L)
Fujian/FCDC-FZ9962881/2024|EPI_ISL_18870003|2024-01-29|输入|Taiwan, China|JN.1> C8809T>
G27750A> C11752T, A22190G(S:I210V)> C12439T, C17977T(Orf1b:L1504F), C24382T
@@ -480,7 +480,7 @@ Singapore/R9MQ12/2024|EPI_ISL_18860227|2024-01-31|输出|China(Mainland)|JN.1> T9151C>
C4234T, A16216G(Orf1b:T917A), C23634T(S:S691F)
Singapore/R10MQ21/2024|EPI_ISL_18888330|2024-02-01|输出|China(Mainland)|JN.1.9>
C3020A(Orf1a:H919N), G8017T, T23596C
Singapore/R10MQ25/2024|EPI_ISL_18888314|2024-02-02|输出|Hong Kong, China|JN.1> T8794C> G2447A(Orf1a:G728S)
-Singapore/R11MQ5/2024|EPI_ISL_18888365|2024-02-05|输出|Hong Kong, China|JN.1.4> T18453C>
C28201T(Orf1a:S103L)> C19017T> C19170T, G21974C(S:D138H)
+Singapore/R11MQ5/2024|EPI_ISL_18888365|2024-02-05|输出|Hong Kong, China|JN.1.4.3> C19017T>
C19170T, G21974C(S:D138H)