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Cannot export to sonata a population of SpikeArray() objects #663

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stefanocasali984 opened this issue Dec 28, 2019 · 0 comments
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@stefanocasali984
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stefanocasali984 commented Dec 28, 2019

Hi,

I'm trying to convert a network built in pyNN to Sonata, using the export_to_sonata function.
A specific cell population should be entirely composed by "parrot neurons" - in the original pyNEST model, this population simply gates some spike-trains and relay them to specific target cells, belonging to three different populations - ; I thought that a reasonable alternative for pyNN could be a SpikeArray.
When I build my Network with populations and projections inside, the export_to_sonata function throws an error if the SpikeArray is included:

TypeError: Object dtype dtype('O') has no native HDF5 equivalent

If I remove the SpikeArray population, the conversion works.
Is there any way to bypass this issue? Maybe I should use something different from a SpikeArray?

Thanks in advance

EDIT: I'm using pyNN version 0.9.4

@apdavison apdavison added this to the 0.9.6 milestone May 18, 2020
@apdavison apdavison modified the milestones: 0.9.6, 0.10.0 Dec 22, 2020
@apdavison apdavison modified the milestones: 0.10.0, 0.10.1 Mar 21, 2022
@apdavison apdavison modified the milestones: 0.10.1, 0.10.2 Oct 13, 2022
@apdavison apdavison modified the milestones: 0.10.2, 0.11.0 Feb 5, 2023
@apdavison apdavison modified the milestones: 0.11.0, 0.13.0 Feb 21, 2024
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