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python311Packages.scikit-survival: 0.21.0 -> 0.22.1; fix build #266019

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merged 1 commit into from Nov 8, 2023
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python311Packages.scikit-survival: 0.21.0 -> 0.22.1; fix build #266019

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18 changes: 13 additions & 5 deletions pkgs/development/python-modules/scikit-survival/default.nix
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Original file line number Diff line number Diff line change
Expand Up @@ -17,12 +17,12 @@

buildPythonPackage rec {
pname = "scikit-survival";
version = "0.21.0";
format = "setuptools";
version = "0.22.1";
pyproject = true;

src = fetchPypi {
inherit pname version;
hash = "sha256-rcdEtlmD3O2BQuwxRlOJ/HOEBdWJBRJR5UR6rZoeArw=";
hash = "sha256-Ft0Hg5iF9Sb9VSOsFMgfAvc4Nsam216kzt5Xv2iykv8=";
};

nativeBuildInputs = [
Expand All @@ -45,6 +45,11 @@ buildPythonPackage rec {

nativeCheckInputs = [ pytestCheckHook ];

# treat numpy versions as lower bounds, same as setuptools build
postPatch = ''
sed -i 's/numpy==/numpy>=/' pyproject.toml
'';

# Hack needed to make pytest + cython work
# https://github.com/NixOS/nixpkgs/pull/82410#issuecomment-827186298
preCheck = ''
Expand All @@ -63,10 +68,13 @@ buildPythonPackage rec {
"test_pandas_inputs"
"test_survival_svm"
"test_tree"
];
] ++ lib.optional (stdenv.isDarwin && stdenv.isAarch64)
# floating point mismatch on aarch64
# 27079905.88052468 to far from 27079905.880496684
"test_coxnet"
;

meta = with lib; {
broken = (stdenv.isLinux && stdenv.isAarch64);
description = "Survival analysis built on top of scikit-learn";
homepage = "https://github.com/sebp/scikit-survival";
license = licenses.gpl3Only;
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