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Updating format of the sample sheet #47

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skchronicles opened this issue Oct 15, 2024 · 1 comment
Open

Updating format of the sample sheet #47

skchronicles opened this issue Oct 15, 2024 · 1 comment
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@skchronicles
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Let's rename the Input column to Input_Control and make it an optional column (for ATAC-seq). The name Input for ChIP samples could causes some confusion for users who are not experienced with ChIP-seq. We will also need to update any references in the docs/help command to reflect these changes.
@skchronicles skchronicles self-assigned this Oct 15, 2024
@tovahmarkowitz
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While doing that, can you also make an option for the --genome flag to take a custom json? Like you do for the rna-seek pipeline?

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@skchronicles @tovahmarkowitz