test-coverage-all-OS.yaml

on:
  push:
    branches:
      - master
  pull_request:
    branches:
      - master

name: CODECOV

jobs:
  R-CMD-check:
    runs-on: ${{ matrix.config.os }}
    name: ${{ matrix.config.os }} (${{ matrix.config.r }})

    strategy:
      fail-fast: false
      matrix:
        config:
          - {os: macOS-latest,   r: 'release'}
          - {os: windows-latest, r: 'release'}
          - {os: ubuntu-20.04,   r: 'release'}

    env:
      ACTIONS_ALLOW_UNSECURE_COMMANDS: true
      R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
      RSPM: ${{ matrix.config.rspm }}
      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
      CODECOV_DEBUG: true

    steps:
      - uses: actions/checkout@v2

      # Install libomp via Homebrew for macOS
      - name: Install libomp on macOS
        if: runner.os == 'macOS'
        run: |
          brew install libomp

      # Set DYLD_LIBRARY_PATH on macOS
      - name: Set DYLD_LIBRARY_PATH for libomp on macOS
        if: runner.os == 'macOS'
        run: |
          echo "DYLD_LIBRARY_PATH=$(brew --prefix libomp)/lib" >> $GITHUB_ENV
        shell: bash

      - uses: r-lib/actions/setup-r@v2-branch
        with:
          r-version: ${{ matrix.config.r }}
          http-user-agent: ${{ matrix.config.http-user-agent }}

      - uses: r-lib/actions/setup-pandoc@v2-branch

      - uses: conda-incubator/setup-miniconda@v3
        with:
          auto-update-conda: true
          python-version: 3.9
          miniconda-version: "latest"

      - name: Query dependencies
        run: |
          install.packages('remotes')
          saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2)
          writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version")
        shell: Rscript {0}

      - name: Cache R packages
        if: runner.os != 'Windows'
        uses: actions/cache@v4
        with:
          path: ${{ env.R_LIBS_USER }}
          key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }}
          restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-

      - name: Install system dependencies
        if: runner.os == 'Linux'
        run: |
          while read -r cmd
          do
            eval sudo $cmd
          done < <(Rscript -e 'cat(remotes::system_requirements("ubuntu", "20.04"), sep = "\n")')
          sudo apt install libharfbuzz-dev
          sudo apt install libfribidi-dev

      - name: Install dependencies
        run: |
          remotes::install_deps(dependencies = TRUE)
          remotes::install_cran("rcmdcheck")
        shell: Rscript {0}

      - name: Fix Conda permissions on macOS (SUDO)
        if: runner.os == 'macOS'
        run: sudo chown -R $UID $CONDA

      - name: Installing text and testing it
        run:  |
          install.packages("devtools")
          library(devtools)
          devtools::install_github("oscarkjell/text")
          text::textrpp_install(prompt = FALSE)
          text::textrpp_initialize(textEmbed_test = TRUE)
        shell: Rscript {0}

      - name: Session info
        run: |
          options(width = 100)
          pkgs <- installed.packages()[, "Package"]
          sessioninfo::session_info(pkgs, include_base = TRUE)
        shell: Rscript {0}

      # Ensure OMP_MAX_ACTIVE_LEVELS is set to avoid OpenMP issues
      - name: Test coverage
        env:
          OMP_MAX_ACTIVE_LEVELS: 2
        run: covr::codecov()
        shell: Rscript {0}

      # Wait to ensure all coverage data is saved
      - name: Wait for coverage files to be ready
        run: sleep 5

      # Upload coverage to Codecov using Codecov Action for each OS with flags
      - name: Upload coverage to Codecov (macOS)
        if: runner.os == 'macOS'
        uses: codecov/codecov-action@v3
        with:
          token: ${{ secrets.CODECOV_TOKEN }}
          flags: macos
          verbose: true

      - name: Upload coverage to Codecov (Windows)
        if: runner.os == 'Windows'
        uses: codecov/codecov-action@v3
        with:
          token: ${{ secrets.CODECOV_TOKEN }}
          flags: windows
          verbose: true

      - name: Upload coverage to Codecov (Ubuntu)
        if: runner.os == 'Linux'
        uses: codecov/codecov-action@v3
        with:
          token: ${{ secrets.CODECOV_TOKEN }}
          flags: ubuntu
          verbose: true