_index.md

id	draft	title	description	sections	publications
publications	false	Publications	The PESTILLI LAB's scientific publications have appeared in a wide range of journals, reaching diverse scientific communities, including neuroscience, psychology, computer science, and engineering. These papers contribute to both the understanding of normative and clinical populations, encompassing the development of innovative methods to study brain and behavior, as well as the application of these methods to advance scientific knowledge.	intro publications	partial publications grants publications/publications authors doi journal publicationDate title Hiromasa Takemura Saad Jbabdi Cesar F. Caiafa Brian A. Wandell Franco Pestilli 10.1371/journal.pcbi.1004692 PLOS Computational Biology 2016-02-04 Ensemble Tractography authors doi journal publicationDate title Saori C Tanaka Kiyoto Kasai Yasumasa Okamoto Shinsuke Koike Takuya Hayashi Ayumu Yamashita Okito Yamashita Tom Johnstone Franco Pestilli Kenji Doya Go Okada Hotaka Shinzato Eri Itai Yuji Takahara Akihiro Takamiya Motoaki Nakamura Takashi Itahashi Ryuta Aoki Yukiaki Koizumi Masaaki Shimizu Jun Miyata Shuraku Son Morio Aki Naohiro Okada Susumu Morita Nobukatsu Sawamoto Mitsunari Abe Yuki Oi Kazuaki Sajima Koji Kamagata Masakazu Hirose Yohei Aoshima Sayo Hamatani Nobuhiro Nohara Misako Funaba Tomomi Noda Kana Inoue Jinichi Hirano Masaru Mimura Hidehiko Takahashi Nobutaka Hattori Atsushi Sekiguchi Mitsuo Kawato Takashi Hanakawa doi.org/10.1111/pcn.13717 Psychiatry and Clinical Neurosciences 2024-08-20 The status of MRI databases across the world focused on psychiatric and neurological disorders authors doi journal publicationDate title S Vinci-Booher DJ McDonald E Berquist F Pestilli doi.org/10.1038/s42003-024-06420-1 Nature Publishing Group 2024-06-22 Associative white matter tracts selectively predict sensorimotor learning authors doi journal publicationDate title Soichi Hayashi Bradley A Caron Anibal Sólon Heinsfeld Sophia Vinci-Booher Brent McPherson Daniel N Bullock Giulia Bertò Guiomar Niso Sandra Hanekamp Daniel Levitas Kimberly Ray Anne MacKenzie Paolo Avesani Lindsey Kitchell Josiah K Leong Filipi Nascimento-Silva Serge Koudoro Hanna Willis Jasleen K Jolly Derek Pisner Taylor R Zuidema Jan W Kurzawski Kyriaki Mikellidou Aurore Bussalb Maximilien Chaumon Nathalie George Christopher Rorden Conner Victory Dheeraj Bhatia Dogu Baran Aydogan Fang-Cheng F Yeh Franco Delogu Javier Guaje Jelle Veraart Jeremy Fischer Joshua Faskowitz Ricardo Fabrega David Hunt Shawn McKee Shawn T Brown Stephanie Heyman Vittorio Iacovella Amanda F Mejia Daniele Marinazzo R Cameron Craddock Emanuale Olivetti Jamie L Hanson Eleftherios Garyfallidis Dan Stanzione James Carson Robert Henschel David Y Hancock Craig A Stewart David Schnyer Damian O Eke Russell A Poldrack Steffen Bollmann Ashley Stewart Holly Bridge Ilaria Sani Winrich A Freiwald Aina Puce Nicholas L Port Franco Pestilli doi.org/10.1038/s41592-024-02237-2 Nature Methods 2024-05-01 brainlife. io a decentralized and open-source cloud platform to support neuroscience research authors doi journal publicationDate title Angela I Renton Thuy T Dao Tom Johnstone Oren Civier Ryan P Sullivan David J White Paris Lyons Benjamin M Slade David F Abbott Toluwani J Amos Saskia Bollmann Andy Botting Megan EJ Campbell Jeryn Chang Thomas G Close Monika Dörig Korbinian Eckstein Gary F Egan Stefanie Evas Guillaume Flandin Kelly G Garner Marta I Garrido Satrajit S Ghosh Martin Grignard Yaroslav O Halchenko Anthony J Hannan Anibal S Heinsfeld Laurentius Huber Matthew E Hughes Jakub R Kaczmarzyk Lars Kasper Levin Kuhlmann Kexin Lou Yorguin-Jose Mantilla-Ramos Jason B Mattingley Michael L Meier Jo Morris Akshaiy Narayanan Franco Pestilli Aina Puce Fernanda L Ribeiro Nigel C Rogasch Chris Rorden Mark M Schira Thomas B Shaw Paul F Sowman Gershon Spitz Ashley W Stewart Xincheng Ye Judy D Zhu Aswin Narayanan Steffen Bollmann doi.org/10.1038/s41592-023-02145-x Nature methods 2024-05-01 Neurodesk an accessible, flexible and portable data analysis environment for reproducible neuroimaging authors doi journal publicationDate title Daniel Levitas Soichi Hayashi Sophia Vinci-Booher Anibal Heinsfeld Dheeraj Bhatia Nicholas Lee Anthony Galassi Guiomar Niso Franco Pestilli doi.org/10.1038/s41597-024-02959-0 Scientific data 2024-02-08 ezBIDS Guided standardization of neuroimaging data interoperable with major data archives and platforms authors doi journal publicationDate title Giulia Bertò Lauren T Rooks Steven P Broglio Thomas A McAllister Michael A McCrea Paul F Pasquina Christopher Giza Alison Brooks Jason Mihalik Kevin Guskiewicz Josh Goldman Stefan Duma Steven Rowson Nicholas L Port Franco Pestilli doi.org/10.1016/j.nicl.2024.103646 Neuroimage clinical 2024-01-01 Diffusion tensor analysis of white matter tracts is prognostic of persisting post-concussion symptoms in collegiate athletes authors doi journal publicationDate title Erik C Johnson Thinh T Nguyen Benjamin K Dichter Frank Zappulla Montgomery Kosma Kabilar Gunalan Yaroslav O Halchenko Shay Q Neufeld Michael Schirner Petra Ritter Maryann E Martone Brock Wester Franco Pestilli Dimitri Yatsenko doi.org/10.48550/arXiv.2401.00077 arXiv preprint arXiv 2401.00077 2023-12-29 A Maturity Model for Operations in Neuroscience Research authors doi journal publicationDate title Eberechi Wogu Patrick Filima Bradley Caron Daniel Levitas Peer Herholz Catherine Leal Mohammed F Mehboob Soichi Hayashi Simisola Akintoye George Ogoh Tawe Godwin Damian Eke Franco Pestilli PMID 37986723 Arxiv 2023-11-08 A labeled Clinical-MRI dataset of Nigerian brains authors doi journal publicationDate title Chris Parker Jorge Mejia Franco Pestilli doi.org/10.2139/ssrn.4714781 SSRN 4714781 2023-07-04 The Growth Rate of COVID-19 Cases in Spring 2020 Was Associated With Individual Mobility and County-level Political Leaning authors doi journal publicationDate title Sophia Vinci-Booher Margaret L Schlichting Alison R Preston Franco Pestilli doi.org/10.1093/cercor/bhad276 Cerebral Cortex 2023-09-15 Development of human hippocampal subfield microstructure and relation to associative inference authors doi journal publicationDate title Sophia Vinci-Booher Elizabeth Berquist Franco Pestilli doi:https://doi.org/10.1167/jov.22.14.4258 Journal of Vision 2022-12-05 White matter tracts traveling between cortical regions associated with the dorsal and ventral visual streams predict learning a perceptual-motor task authors doi journal publicationDate title Guiomar Niso Rotem Botvinik-Nezer Stefan Appelhoff Alejandro De La Vega Oscar Esteban Joset A Etzel Karolina Finc Melanie Ganz Remi Gau Yaroslav O Halchenko Peer Herholz Agah Karakuzu David B Keator Christopher J Markiewicz Camille Maumet Cyril R Pernet Franco Pestilli Nazek Queder Tina Schmitt Weronika Sójka Adina S Wagner Kirstie J Whitaker Jochem W Rieger doi.org/10.1016/j.neuroimage.2022.119623 NeuroImage 2022-11-01 Open and reproducible neuroimaging From study inception to publication authors doi journal publicationDate title Daniel N Bullock Elena A Hayday Mark D Grier Wei Tang Franco Pestilli Sarah R Heilbronner doi.org/10.1093/cercor/bhab500 Cerebral Cortex 2022-10-15 A taxonomy of the brain’s white matter twenty-one major tracts for the 21st century authors doi journal publicationDate title Hu Cheng Sophia Vinci-Booher Jian Wang Bradley Caron Qiuting Wen Sharlene Newman Franco Pestilli doi.org/10.1371/journal.pone.0274396 Plos one 2022-09-15 Denoising diffusion weighted imaging data using convolutional neural networks authors doi journal publicationDate title Varsha Sreenivasan Sawan Kumar Franco Pestilli Partha Talukdar Devarajan Sridharan doi.org/10.1038/s43588-022-00250-z Nature Computational Science 2022-05-01 GPU-accelerated connectome discovery at scale authors doi journal publicationDate title Xiaoxuan Liang Aaron Cohen Anibal Solón Heinsfeld Franco Pestilli Daniel J McDonald doi.org/10.48550/arXiv.2208.02942 arXiv preprint arXiv:2208.02942 2022-08-05 sparsegl An r package for estimating sparse group lasso authors doi journal publicationDate title S Vinci-Booher B Caron D Bullock K James Franco Pestilli doi.org/10.1007/s00429-021-02414-5 Brain Structure and Function 2022-05-01 Development of white matter tracts between and within the dorsal and ventral streams authors doi journal publicationDate title Mariana Babo-Rebelo Aina Puce D Bullock Laurent Hugueville Franco Pestilli C Adam Katia Lehongre Virginie Lambrecq Vera Dinkelacker Nathalie George doi.org/10.1093/cercor/bhab212 Cerebral Cortex 2022-01-15 Visual information routes in the posterior dorsal and ventral face network studied with intracranial neurophysiology and white matter tract endpoints authors doi journal publicationDate title Emily J Allen Ghislain St-Yves Yihan Wu Jesse L Breedlove Jacob S Prince Logan T Dowdle Matthias Nau Brad Caron Franco Pestilli Ian Charest J Benjamin Hutchinson Thomas Naselaris Kendrick Kay doi.org/10.1038/s41593-021-00962-x Nat Neurosci 2022-01-01 A massive 7T fMRI dataset to bridge cognitive neuroscience and artificial intelligence authors doi journal publicationDate title Shiloh L. Echevarria-Cooper Guangyu Zhou Christina Zelano Franco Pestilli Todd B. Parrish Thorsten Kahnt 10.1523/JNEUROSCI.1552-21.2021 The Journal of Neuroscience 2022-01-05 Mapping the Microstructure and Striae of the Human Olfactory Tract with Diffusion MRI authors doi journal publicationDate title Jan W. Kurzawski Kyriaki Mikellidou Maria Concetta Morrone Franco Pestilli 10.1007/s00429-020-02096-5 Brain Structure and Function 2020-07-13 The visual white matter connecting human area prostriata and the thalamus is retinotopically organized authors doi journal publicationDate title Franco Pestilli Jason D Yeatman Ariel Rokem Kendrick N Kay Brian A Wandell 10.1038/nmeth.3098 Nat Meth 2014-09-07 Evaluation and statistical inference for human connectomes authors doi publicationDate title Damian Eke Amy Bernard Jan G. Bjaalie Ricardo Chavarriaga Takashi Hanakawa Anthony Hannan Sean Hill Maryann Elizabeth Martone Agnes McMahon Oliver Ruebel Edda Thiels Franco Pestilli 10.31234/osf.io/esz9b 2021-06-01 International Data Governance for Neuroscience authors doi journal publicationDate title Shoyo Yoshimine Shumpei Ogawa Hiroshi Horiguchi Masahiko Terao Atsushi Miyazaki Kenji Matsumoto Hiroshi Tsuneoka Tadashi Nakano Yoichiro Masuda Franco Pestilli 10.1007/s00429-018-1702-5 Brain Structure and Function 2018-11-27 Age-related macular degeneration affects the optic radiation white matter projecting to locations of retinal damage authors doi publicationDate title Kylie Black Brent McPherson John Hainline Shawyon Baygani Brynna Webb Tristen Mier Amanda Essex Ken Mackie Franco Pestilli Anna Kalinovsky 10.1101/2021.07.03.450642 2021-07-03 Deep learning and cross-species analysis identify the influences of sex and cannabinoid signaling on cerebellar vermis morphology authors doi publicationDate title Bradley Caron Daniel Bullock Lindsey Kitchell Brent McPherson Derek Alexander Kellar Hu Cheng Sharlene D. Newman Nicholas L. Port Franco Pestilli 10.31234/osf.io/dxaqp 2020-01-03 Advanced mapping of the human white matter microstructure better separates elite sports participation authors doi publicationDate title Robert J. Puzniak Khazar Ahmadi Jörn Kaufmann Andre Gouws Antony B. Morland Franco Pestilli Michael B. Hoffmann 10.1101/633347 2019-05-09 Quantifying nerve decussation abnormalities in the optic chiasm authors doi publicationDate title Daniel N. Bullock Hiromasa Takemura Cesar Caiafa Lindsey Kitchell Brent McPherson Bradley Caron Franco Pestilli 10.31234/osf.io/kp3hj 2019-07-14 Associative white matter connecting the dorsal and ventral posterior human cortex authors doi journal publicationDate title Ilaria Sani Brent C McPherson Heiko Stemmann Franco Pestilli Winrich A Freiwald 10.7554/eLife.40520 eLife 2019-01-02 Functionally defined white matter of the macaque monkey brain reveals a dorso-ventral attention network authors doi publicationDate title Giulia Bertò Daniel Bullock Pietro Astolfi Soichi Hayashi Luca Zigiotto Luciano Annicchiarico Francesco Corsini Alessandro De Benedictis Silvio Sarubbo Franco Pestilli Paolo Avesani Emanuele Olivetti 10.1101/2020.02.10.942714 2020-02-12 Classifyber, a robust streamline-based linear classifier for white matter bundle segmentation authors doi journal publicationDate title G. T. Saber F. Pestilli C. E. Curtis 10.1523/jneurosci.1687-14.2015 Journal of Neuroscience 2015-01-07 Saccade Planning Evokes Topographically Specific Activity in the Dorsal and Ventral Streams authors doi journal publicationDate title Franco Pestilli 10.1038/sdata.2014.57 Scientific Data 2015-12-20 Test-retest measurements and digital validation for in vivo neuroscience authors doi publicationDate title M Babo-Rebelo A Puce D Bullock L Hugueville F Pestilli C Adam K Lehongre V Lambrecq V Dinkelacker N George 10.1101/2020.05.22.102046 2020-05-25 Visual information routes in the posterior dorsal and ventral face network studied with intracranial neurophysiology, and white matter tract endpoints authors doi publicationDate title Brent McPherson Franco Pestilli 10.1101/2020.09.24.312090 2020-09-24 A single-mode associates global patterns of brain network structure and behavior across the human lifespan authors doi publicationDate title Shoyo Yoshimine Shumpei Ogawa Hiroshi Horiguchi Masahiko Terao Atsushi Miyazaki Kenji Matsumoto Hiroshi Tsuneoka Tadashi Nakano Yoichiro Masuda Franco Pestilli 10.1101/336206 2018-05-31 Age-related macular degeneration affects the optic radiation white matter projecting to locations of retinal damage authors doi journal publicationDate title Franco Pestilli 10.1371/journal.pbio.2005758 PLOS Biology 2018-04-26 Human white matter and knowledge representation authors doi journal publicationDate title F. Pestilli G. Viera M. Carrasco 10.1167/7.7.9 Journal of Vision 2007-05-01 How do attention and adaptation affect contrast sensitivity? authors doi publicationDate title S. Vinci-Booher B. Caron D. Bullock K. James F. Pestilli 10.1101/2021.01.27.428423 2021-01-27 Development of white matter tracts between and within the dorsal and ventral streams authors doi publicationDate title Khazar Ahmadi Alessio Fracasso Robert J. Puzniak Andre D. Gouws Renat Yakupov Oliver Speck Joern Kaufmann Franco Pestilli Serge O. Dumoulin Antony B. Morland Michael B. Hoffmann 10.1101/703520 2019-07-16 Triple visual hemifield maps in optic chiasm hypoplasia authors doi publicationDate title Jan W. Kurzawski Kyriaki Mikellidou Maria Concetta Morrone Franco Pestilli 10.1101/2020.04.19.047993 2020-04-20 The visual white matter connecting human area prostriata and the thalamus is retinotopically organized authors doi journal publicationDate title Daniel Bullock Hiromasa Takemura Cesar F. Caiafa Lindsey Kitchell Brent McPherson Bradley Caron Franco Pestilli 10.1007/s00429-019-01907-8 Brain Structure and Function 2019-11-24 Associative white matter connecting the dorsal and ventral posterior human cortex authors doi journal publicationDate title Michael Hanke Franco Pestilli Adina S. Wagner Christopher J. Markiewicz Jean-Baptiste Poline Yaroslav O. Halchenko 10.1515/nf-2020-0037 Neuroforum 2021-01-11 In defense of decentralized research data management authors doi journal publicationDate title Sam Ling Janneke F. M. Jehee Franco Pestilli 10.1007/s00429-014-0818-5 Brain Struct Funct 2014-07-03 A review of the mechanisms by which attentional feedback shapes visual selectivity startDate endDate title 2015-09-01 2017-08-31 Improved accuracy for anatomical mapping and network structure of the Alzheimer's brain. startDate title 2020-08-01 Advancing understanding of human aging via cloud computing startDate title 2022-03-01 A pilot study to develop international data governance for neuroscience grantor url startDate endDate title NSF https://www.nsf.gov/awardsearch/showAward?AWD_ID=1734853&HistoricalAwards=false 2017-09-01 2021-12-31 NCS-FO: Connectome mapping algorithms with application to community services for big data neuroscience grantor url startDate endDate title NSF https://www.nsf.gov/awardsearch/showAward?AWD_ID=1636893&HistoricalAwards=false 2016-09-01 2021-10-31 BD Spokes: SPOKE: MIDWEST: Collaborative: Advanced Computational Neuroscience Network (ACNN) grantor url startDate endDate title NSF https://www.nsf.gov/awardsearch/showAward?AWD_ID=2148729&HistoricalAwards=false 2021-11-01 2023-06-30 BD Spokes: SPOKE: MIDWEST: Collaborative: Advanced Computational Neuroscience Network (ACNN) grantor url startDate endDate title NIH https://projectreporter.nih.gov/project_info_description.cfm?aid=10253558 2021-08-01 2023-07-31 A community-driven development of the brain imaging data standard (BIDS) to describe macroscopic brain connections grantor url startDate endDate title NSF https://www.nsf.gov/awardsearch/showAward?AWD_ID=2203524&HistoricalAwards=false 2021-10-01 2023-09-30 NCS-FO: Connectome mapping algorithms with application to community services for big data neuroscience grantor url startDate endDate title NSF https://www.nsf.gov/awardsearch/showAward?AWD_ID=1916518&HistoricalAwards=false 2019-06-01 2023-05-31 BD Hubs: Collaborative Proposal: Midwest: Midwest Big Data Hub: Building Communities to Harness the Data Revolution grantor url startDate endDate title NIH https://projectreporter.nih.gov/project_info_description.cfm?aid=10262925 2019-09-01 2023-06-30 CRCNS: US-France Data Sharing Proposal: Lowering the barrier of entry to network neuroscience grantor url startDate endDate title NSF https://www.nsf.gov/awardsearch/showAward?AWD_ID=2004877&HistoricalAwards=false 2020-09-01 2022-08-31 Harnessing machine learning and cloud computing to test biological models of the role of white matter in human learning grantor url startDate endDate title NSF https://www.nsf.gov/awardsearch/showAward?AWD_ID=2148700&HistoricalAwards=false 2021-10-01 2023-08-31 Collaborative Proposal: CRCNS US-German Data Sharing Proposal: DataLad - a decentralized system for integrated discovery, management, and publication of digital objects of science