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The error message found in the log file is as follows:
Caused by: java.lang.ClassNotFoundException gridss.karken.SubsetToTaxonomy
I looked up "gridss.karken.SubsetToTaxonomy" and found it in the file "SubsetToTaxonomy.java" located at "/home/kde/PROJECTS/VirusIntegrationTools/download/gridss/src/main/java/gridss/kraken/SubsetToTaxonomy.java".
So I added the path and tried 2 ways. export PATH=$PATH:/home/kde/PROJECTS/VirusIntegrationTools/download/gridss/src/main/java/gridss/kraken/
change SubsetToTaxonomy.java to gridss.kraken.SubsetToTaxonomy
-> Same error occurs
change gridss.kraken.SubsetToTaxonomy to SubsetToTaxonomy.java in virusbreakend script
-> Same error occurs
How can I fix this?
Thanks.
The text was updated successfully, but these errors were encountered:
Hello,
The error message found in the log file is as follows:
Caused by: java.lang.ClassNotFoundException gridss.karken.SubsetToTaxonomy
I looked up "gridss.karken.SubsetToTaxonomy" and found it in the file "SubsetToTaxonomy.java" located at "/home/kde/PROJECTS/VirusIntegrationTools/download/gridss/src/main/java/gridss/kraken/SubsetToTaxonomy.java".
So I added the path and tried 2 ways.
export PATH=$PATH:/home/kde/PROJECTS/VirusIntegrationTools/download/gridss/src/main/java/gridss/kraken/
-> Same error occurs
-> Same error occurs
How can I fix this?
Thanks.
The text was updated successfully, but these errors were encountered: