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Hi all,
I'm trying to run your tool using the singularity image and getting the below error. Could you please comment on that?
I don't have permission to write on the reference folder and need a running parameter(s) to avoid creating a file/folder on the reference folder. I tried a couple like --TMP_DIR and --singularity_cache with no luck.
Fri Oct 6 19:45:19 PDT 2023: Running GRIDSS steps: setupreference,
mkdir: cannot create directory '/hg38_no_alt/genome/fasta/hg38_no_alt.fa.tmp.gridsslock': Permission denied
Fri Oct 6 19:45:19 PDT 2023: Multiple instances of setupreference cannot be run concurrently. Aborting due to existence of /hg38_no_alt/genome/fasta/hg38_no_alt.fa.tmp.gridsslock
The text was updated successfully, but these errors were encountered:
Hi all,
I'm trying to run your tool using the singularity image and getting the below error. Could you please comment on that?
I don't have permission to write on the reference folder and need a running parameter(s) to avoid creating a file/folder on the reference folder. I tried a couple like --TMP_DIR and --singularity_cache with no luck.
Thanks,
Ali
my running command:
Error:
The text was updated successfully, but these errors were encountered: