diff --git a/DESCRIPTION b/DESCRIPTION
index ac52495..c5b0372 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -14,7 +14,7 @@ Suggests:
     rmarkdown,
     covr,
     testthat
-Depends: 
+Depends:
     R (>= 2.10)
 Imports:
     whatbacteria
diff --git a/NAMESPACE b/NAMESPACE
index 84beb52..748e543 100644
--- a/NAMESPACE
+++ b/NAMESPACE
@@ -14,4 +14,4 @@ export(mirix_metronidazole)
 export(mirix_vancomycin)
 export(phenotype_susceptibility)
 export(predict_abundance)
-import(mirixdb)
+import(whatbacteria)
diff --git a/R/abx_index.R b/R/abx_index.R
index d60c766..a2b0f8b 100644
--- a/R/abx_index.R
+++ b/R/abx_index.R
@@ -24,8 +24,8 @@ NULL
 mirix_vancomycin <- function(abundance,
                              lineage,
                              replace_zero = 1e-4,
-                             antibiotic_db = mirixdb::taxon_susceptibility,
-                             phenotype_db = mirixdb::taxon_phenotypes) {
+                             antibiotic_db = whatbacteria::taxon_susceptibility,
+                             phenotype_db = whatbacteria::taxon_phenotypes) {
   susceptibility <- antibiotic_susceptibility_vancomycin(
     lineage, antibiotic_db, phenotype_db)
   mirix(abundance, susceptibility, replace_zero)
@@ -36,7 +36,7 @@ mirix_vancomycin <- function(abundance,
 mirix_doxycycline <- function(abundance,
                                lineage,
                                replace_zero = 1e-4,
-                               antibiotic_db = mirixdb::taxon_susceptibility) {
+                               antibiotic_db = whatbacteria::taxon_susceptibility) {
   susceptibility <- antibiotic_susceptibility_tetracycline(
     lineage, antibiotic_db)
   mirix(abundance, susceptibility, replace_zero)
@@ -47,7 +47,7 @@ mirix_doxycycline <- function(abundance,
 mirix_amoxicillin <- function(abundance,
                              lineage,
                              replace_zero = 1e-4,
-                             antibiotic_db = mirixdb::taxon_susceptibility) {
+                             antibiotic_db = whatbacteria::taxon_susceptibility) {
   susceptibility <- antibiotic_susceptibility_penicillin(
     lineage, antibiotic_db)
   mirix(abundance, susceptibility, replace_zero)
@@ -58,7 +58,7 @@ mirix_amoxicillin <- function(abundance,
 mirix_metronidazole <- function(abundance,
                             lineage,
                             replace_zero = 1e-4,
-                            phenotype_db = mirixdb::taxon_phenotypes) {
+                            phenotype_db = whatbacteria::taxon_phenotypes) {
   susceptibility <- phenotype_susceptibility(
     lineage = lineage,
     phenotype = "aerobic_status",
@@ -75,7 +75,7 @@ mirix_metronidazole <- function(abundance,
 mirix_ciprofloxacin <- function(abundance,
                           lineage,
                           replace_zero = 1e-4,
-                          phenotype_db = mirixdb::taxon_phenotypes) {
+                          phenotype_db = whatbacteria::taxon_phenotypes) {
   susceptibility <- phenotype_susceptibility(
     lineage = lineage,
     phenotype = "aerobic_status",
@@ -92,8 +92,8 @@ mirix_ciprofloxacin <- function(abundance,
 mirix_gentamicin <- function(abundance,
                                  lineage,
                                  replace_zero = 1e-4,
-                                 antibiotic_db = mirixdb::taxon_susceptibility,
-                                 phenotype_db = mirixdb::taxon_phenotypes) {
+                                 antibiotic_db = whatbacteria::taxon_susceptibility,
+                                 phenotype_db = whatbacteria::taxon_phenotypes) {
   susceptibility <- antibiotic_susceptibility_aminoglycoside(
     lineage, antibiotic_db, phenotype_db)
   mirix(abundance, susceptibility, replace_zero)
@@ -111,7 +111,7 @@ mirix_gentamicin <- function(abundance,
 #'   0.5 is typical. For relative abundances, a number that is slightly lower
 #'   than the lowest relative abundance will work.
 #'
-#' @import mirixdb
+#' @import whatbacteria
 #' @return The MiRIx value
 #' @export
 mirix <- function (abundance, susceptibility, replace_zero = 1e-4) {
diff --git a/R/susceptibility.R b/R/susceptibility.R
index 529aa04..b38a100 100644
--- a/R/susceptibility.R
+++ b/R/susceptibility.R
@@ -13,8 +13,8 @@ NULL
 #' @rdname antibiotic_specific_susceptibility
 #' @export
 antibiotic_susceptibility_vancomycin <- function (lineage,
-                                       antibiotic_db = mirixdb::taxon_susceptibility,
-                                       phenotype_db = mirixdb::taxon_phenotypes) {
+                                       antibiotic_db = whatbacteria::taxon_susceptibility,
+                                       phenotype_db = whatbacteria::taxon_phenotypes) {
   # Gram-positive organisms are susceptible to vancomycin
   ph_sus <- phenotype_susceptibility(
     lineage = lineage,
@@ -33,7 +33,7 @@ antibiotic_susceptibility_vancomycin <- function (lineage,
 #' @rdname antibiotic_specific_susceptibility
 #' @export
 antibiotic_susceptibility_tetracycline <- function (lineage,
-                                         antibiotic_db = mirixdb::taxon_susceptibility) {
+                                         antibiotic_db = whatbacteria::taxon_susceptibility) {
   intrinsic_sus <- rep("susceptible", length(lineage))
   abx_sus <- antibiotic_susceptibility(
     lineage = lineage,
@@ -45,7 +45,7 @@ antibiotic_susceptibility_tetracycline <- function (lineage,
 #' @rdname antibiotic_specific_susceptibility
 #' @export
 antibiotic_susceptibility_penicillin <- function(lineage,
-                                      antibiotic_db = mirixdb::taxon_susceptibility) {
+                                      antibiotic_db = whatbacteria::taxon_susceptibility) {
   intrinsic_sus <- rep("susceptible", length(lineage))
   abx_sus <- antibiotic_susceptibility(
     lineage = lineage,
@@ -57,13 +57,13 @@ antibiotic_susceptibility_penicillin <- function(lineage,
 #' @rdname antibiotic_specific_susceptibility
 #' @export
 antibiotic_susceptibility_aminoglycoside <- function (lineage,
-                                           antibiotic_db = mirixdb::taxon_susceptibility,
-                                           phenotype_db = mirixdb::taxon_phenotypes) {
-  gram_stain_db <- mirixdb::taxon_phenotypes[,c("taxon", "rank", "gram_stain")]
+                                           antibiotic_db = whatbacteria::taxon_susceptibility,
+                                           phenotype_db = whatbacteria::taxon_phenotypes) {
+  gram_stain_db <- whatbacteria::taxon_phenotypes[,c("taxon", "rank", "gram_stain")]
   colnames(gram_stain_db)[3] <- "value"
   gram_stain_phenotype <- match_annotation(lineage, gram_stain_db)
 
-  aerobic_status_db <- mirixdb::taxon_phenotypes[,c("taxon", "rank", "aerobic_status")]
+  aerobic_status_db <- whatbacteria::taxon_phenotypes[,c("taxon", "rank", "aerobic_status")]
   colnames(aerobic_status_db)[3] <- "value"
   aerobic_status_phenotype <- match_annotation(lineage, aerobic_status_db)
 
diff --git a/man/antibiotic_specific_susceptibility.Rd b/man/antibiotic_specific_susceptibility.Rd
index c86dc0e..05a5ae0 100644
--- a/man/antibiotic_specific_susceptibility.Rd
+++ b/man/antibiotic_specific_susceptibility.Rd
@@ -10,24 +10,24 @@
 \usage{
 antibiotic_susceptibility_vancomycin(
   lineage,
-  antibiotic_db = mirixdb::taxon_susceptibility,
-  phenotype_db = mirixdb::taxon_phenotypes
+  antibiotic_db = whatbacteria::taxon_susceptibility,
+  phenotype_db = whatbacteria::taxon_phenotypes
 )
 
 antibiotic_susceptibility_tetracycline(
   lineage,
-  antibiotic_db = mirixdb::taxon_susceptibility
+  antibiotic_db = whatbacteria::taxon_susceptibility
 )
 
 antibiotic_susceptibility_penicillin(
   lineage,
-  antibiotic_db = mirixdb::taxon_susceptibility
+  antibiotic_db = whatbacteria::taxon_susceptibility
 )
 
 antibiotic_susceptibility_aminoglycoside(
   lineage,
-  antibiotic_db = mirixdb::taxon_susceptibility,
-  phenotype_db = mirixdb::taxon_phenotypes
+  antibiotic_db = whatbacteria::taxon_susceptibility,
+  phenotype_db = whatbacteria::taxon_phenotypes
 )
 }
 \arguments{
diff --git a/man/mirix_antibiotic.Rd b/man/mirix_antibiotic.Rd
index 5446f54..40f7477 100644
--- a/man/mirix_antibiotic.Rd
+++ b/man/mirix_antibiotic.Rd
@@ -14,44 +14,44 @@ mirix_vancomycin(
   abundance,
   lineage,
   replace_zero = 1e-04,
-  antibiotic_db = mirixdb::taxon_susceptibility,
-  phenotype_db = mirixdb::taxon_phenotypes
+  antibiotic_db = whatbacteria::taxon_susceptibility,
+  phenotype_db = whatbacteria::taxon_phenotypes
 )
 
 mirix_doxycycline(
   abundance,
   lineage,
   replace_zero = 1e-04,
-  antibiotic_db = mirixdb::taxon_susceptibility
+  antibiotic_db = whatbacteria::taxon_susceptibility
 )
 
 mirix_amoxicillin(
   abundance,
   lineage,
   replace_zero = 1e-04,
-  antibiotic_db = mirixdb::taxon_susceptibility
+  antibiotic_db = whatbacteria::taxon_susceptibility
 )
 
 mirix_metronidazole(
   abundance,
   lineage,
   replace_zero = 1e-04,
-  phenotype_db = mirixdb::taxon_phenotypes
+  phenotype_db = whatbacteria::taxon_phenotypes
 )
 
 mirix_ciprofloxacin(
   abundance,
   lineage,
   replace_zero = 1e-04,
-  phenotype_db = mirixdb::taxon_phenotypes
+  phenotype_db = whatbacteria::taxon_phenotypes
 )
 
 mirix_gentamicin(
   abundance,
   lineage,
   replace_zero = 1e-04,
-  antibiotic_db = mirixdb::taxon_susceptibility,
-  phenotype_db = mirixdb::taxon_phenotypes
+  antibiotic_db = whatbacteria::taxon_susceptibility,
+  phenotype_db = whatbacteria::taxon_phenotypes
 )
 }
 \arguments{