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simulate.py
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simulate.py
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# sim.py -- Run simulations.
from qraat.srv import util, signal, position
import pickle, gzip, copy
import os, os.path
from multiprocessing import Process
import numpy as np
import matplotlib.pyplot as pp
import matplotlib.colors as colors
import matplotlib.patches as patches
import matplotlib.cm as cmx
import scipy
### SIMULATION ################################################################
JOBS = 2 # Number of processes to spawn in montecarlo_huge()
POS_EXT_FMT = '-%02d.%02d'
POS_EST_M = 3
POS_EST_N = -1
POS_EST_DELTA = 5
POS_EST_S = 10
def nearest_sites(p, sites, k):
# k nearest sites to p
(site_ids, _) = zip(*sorted(list(sites.iteritems()),
key=lambda(item) : np.abs(p - item[1])))
return list(site_ids[:k])
def sites_within_dist(p, sites, dist):
# sites within `dist` meters of `p`
site_ids = []
for (id, site) in sites.iteritems():
if np.abs(p - site) <= dist:
site_ids.append(id)
return site_ids
def create_array_from_params(exp_params, sys_params):
s = 2 * exp_params['half_span'] + 1
return [[[[[] for n in range(s) ]
for e in range(s) ]
for j in range(len(exp_params['sig_n'])) ]
for i in range(len(exp_params['pulse_ct'])) ]
def create_array_from_shape(shape):
return [[[[[] for n in range(shape[3]) ]
for e in range(shape[2]) ]
for j in range(shape[1]) ]
for i in range(shape[0]) ]
def montecarlo(exp_params, sys_params, sv, nearest=None, max_dist=None, compute_cov=True, scale_tx_pwr=True):
''' Run simulations over a grid of points for various sample sizes and noise regimes.
Inputs:
exp_params -- a dictionary specifying the experiments.
{ 'rho' : real number, transmitter power
'sig_n' : list of reals, the noise regime
'pulse_ct' : list of integers, number of samples per site
'center' : complex, representing the center of the grid
'half_span' : integer, number of positions spanning half of hte
side of a grid. Number of grid points: (2*half_span + 1)**2.
'scale' : real, distance in meters between grid points
'trials' : integer, number of trials per position, noise, and sample size. }
sys_params -- a dicitionary specifying the system paramters.
{ 'method' : 'bartlet' or 'mle', algorithm for bearing spectrum
'sites' : siteID -> complex dict, positions of sites.
'include' : list of siteIDs, subset of sites.keys() to use for estimates.
if sys_params['include'] == [], then include all sit4es in
sites.keys().
'center' : complex, initial guess for position estimator }
sv -- instance of `signal.SteeringVectors`.
nearest -- interger, use this number of nearest sites to the position for simulation
max_dist -- real, use all sites within this distance (in meters) for simulation
compute_cov -- Do asymptotic and bootstrap covaraince estimation (position.Covariance and
position.BootstrapCovariance resp.)
scale_tx_pwr -- Scale transmitter power using signal.scale_tx_coeff() method.
Returns (pos, (cov_asym, cov_boot)), where pos, cov_asym, and cov_boot are multidimensional arrays
with the first dimension indexing over pulse_ct, the second over sig_n, the third over easting of
the grid, the fourth over northing, and the fifth over the independent trials.
The elements of pos are np.complex()'s, the elements of cov_asym and cov_boot are
position.Covariance and position.BootstrapCovariance instances respictively.
If compute_cov == False, then cov_asym = None and cov_boot = None
'''
s = 2 * exp_params['half_span'] + 1
shape = (len(exp_params['pulse_ct']), len(exp_params['sig_n']), s, s, exp_params['trials'])
pos = np.zeros(shape, dtype=np.complex)
if compute_cov:
cov_asym = create_array_from_params(exp_params, sys_params) # Asymptotic
cov_boot = create_array_from_params(exp_params, sys_params) # Bootstrap
else:
cov_asym = cov_boot = None
if sys_params['method'] == 'bartlet':
method = signal.Signal.Bartlet
elif sys_params['method'] == 'mle':
method = signal.Signal.MLE
else: raise Exception('Unknown method')
sites = sys_params['sites']
# Fix transmission power.
if scale_tx_pwr:
scaled_rho = signal.scale_tx_coeff(exp_params['center'],
exp_params['rho'],
sites,
sys_params['include'])
else:
scaled_rho = exp_params['rho']
# Interpolate steering vector splines.
sv_splines = signal.compute_bearing_splines(sv)
for i, pulse_ct in enumerate(exp_params['pulse_ct']):
print 'pulse_ct=%d' % pulse_ct
for j, sig_n in enumerate(exp_params['sig_n']):
print ' sig_n=%f' % sig_n
for e in range(s): #easting
print 'row', e
for n in range(s): #northing
P = exp_params['center'] + np.complex((n - exp_params['half_span']) * exp_params['scale'],
(e - exp_params['half_span']) * exp_params['scale'])
if nearest is not None:
include = nearest_sites(P, sites, nearest)
elif max_dist is not None:
include = sites_within_dist(P, sites, max_dist)
if include == []: # No sites can see the transmitter!
for k in range(exp_params['trials']):
pos[i,j,e,n,k] = None
if compute_cov:
cov_asym[i][j][e][n].append(None)
cov_boot[i][j][e][n].append(None)
continue
else:
include = sys_params['include']
for k in range(exp_params['trials']):
# Run simulation.
sig = signal.Simulator(P, sites, sv_splines, scaled_rho, sig_n, pulse_ct, include)
P_hat = position.PositionEstimator(sig, sites, P, sv, method,
s=POS_EST_S, m=POS_EST_M, n=POS_EST_N, delta=POS_EST_DELTA)
pos[i,j,e,n,k] = P_hat.p
# Estimate confidence region.
if compute_cov:
cov_asym[i][j][e][n].append(position.Covariance(P_hat, sites, p_known=P))
try:
cov_boot[i][j][e][n].append(position.BootstrapCovariance(P_hat, sites))
except np.linalg.linalg.LinAlgError:
print "Singular matrix!"
cov_boot[i][j][e][n].append(None)
return (pos, (cov_asym, cov_boot))
def montecarlo_huge(prefix, exp_params, sys_params, sv, nearest=None, compute_cov=True):
''' Variant of montecarlo() for huge data sets.
Intermediate results per position are stored to disk; no results are returend.
This code spawns a number of processes and divides the set of positions to simulate
among them. It is also designed to be interruptable. It searches for inteermediate
results stored on disk and doesn't recompute these.
Inputs:
prefix -- the begining of file names.
'''
s = 2 * exp_params['half_span'] + 1
shape = (len(exp_params['pulse_ct']), len(exp_params['sig_n']), exp_params['trials'])
if sys_params['method'] == 'bartlet':
method = signal.Signal.Bartlet
elif sys_params['method'] == 'mle':
method = signal.Signal.MLE
else: raise Exception('Unknown method')
sites = sys_params['sites']
# Fix transmission power.
scaled_rho = signal.scale_tx_coeff(exp_params['center'],
exp_params['rho'],
sites,
sys_params['include'])
print 'scaled_rho:', scaled_rho
# Interpolate steering vector splines.
sv_splines = signal.compute_bearing_splines(sv)
# Compile a list of points to simulate.
Q = []
for e in range(s): #easting
for n in range(s): #northing
if not os.path.isfile(prefix+(POS_EXT_FMT % (e,n))+'-pos.npz'):
Q.append((e,n))
# Partition points into processes.
Qs = []
q = len(Q) / JOBS
for j in range(JOBS):
Qs.append(Q[q*j:q*(j+1)])
Qs[-1] += Q[q*JOBS:]
args = (prefix, exp_params, sys_params, sv, nearest, compute_cov,
shape, method, sites, scaled_rho, sv_splines)
# Spawn a process for each set of points.
proc = []
for Q in Qs:
proc.append( Process(target=_montecarlo_huge, args=args + (Q,)) )
proc[-1].start()
# Wait for them to finish.
for i in range(len(Qs)):
proc[i].join()
def _montecarlo_huge(prefix, exp_params, sys_params, sv, nearest, compute_cov,
shape, method, sites, scaled_rho, sv_splines, Q):
for (e,n) in Q:
print e,n
pos = np.zeros(shape, dtype=np.complex)
if compute_cov:
cov_asym = [[[] for j in range(len(exp_params['sig_n'])) ]
for i in range(len(exp_params['pulse_ct'])) ]
cov_boot = [[[] for j in range(len(exp_params['sig_n'])) ]
for i in range(len(exp_params['pulse_ct'])) ]
else:
cov_asym = cov_boot = None
for i, pulse_ct in enumerate(exp_params['pulse_ct']):
print 'pulse_ct=%d' % pulse_ct
for j, sig_n in enumerate(exp_params['sig_n']):
print ' sig_n=%f' % sig_n
P = exp_params['center'] + np.complex((n - exp_params['half_span']) * exp_params['scale'],
(e - exp_params['half_span']) * exp_params['scale'])
for k in range(exp_params['trials']):
# Run simulation.
if nearest is None:
include = sys_params['include']
else:
include = nearest_sites(P, sites, nearest)
sig = signal.Simulator(P, sites, sv_splines, scaled_rho, sig_n, pulse_ct, include)
# Estimate position.
P_hat = position.PositionEstimator(sig, sites, P, sv, method,
s=POS_EST_S, m=POS_EST_M, n=POS_EST_N, delta=POS_EST_DELTA)
pos[i,j,k] = P_hat.p
# Estimate confidence region.
if compute_cov:
cov_asym[i][j].append(position.Covariance(P_hat, sites, p_known=P))
try:
cov_boot[i][j].append(position.BootstrapCovariance(P_hat, sites))
except np.linalg.linalg.LinAlgError:
print "Singular matrix!"
cov_boot[i][j].append(None)
# Save intermediate results.
save(prefix, pos, (cov_asym, cov_boot),
exp_params, sys_params, add=POS_EXT_FMT % (e, n))
# montecarlo_huge()
### SAVE RESULTS ##############################################################
def save(prefix, pos, cov, exp_params, sys_params, add=''):
''' Save intermediate results.
Class instances are pickled; the positions are stored in
Numpy zip file thingies.
Inputs:
pos -- as outputted by montecarlo().
cov -- cov[0] corresponds to cov_asym, cov[1] to cov_boot.
exp_params, sys_params -- these are also stored.
'''
np.savez(prefix+add + '-pos', pos)
pickle.dump(cov[0], open(prefix+add + '-cov0', 'w'))
pickle.dump(cov[1], open(prefix+add + '-cov1', 'w'))
pickle.dump((exp_params, sys_params), open(prefix + '-params', 'w'))
def load(prefix, add=''):
''' Load results from disk. '''
pos = np.load(prefix+add + '-pos.npz')['arr_0']
cov0 = pickle.load(open(prefix+add + '-cov0', 'r'))
cov1 = pickle.load(open(prefix+add + '-cov1', 'r'))
(exp_params, sys_params) = pickle.load(open(prefix + '-params'))
return (pos, (cov0, cov1), exp_params, sys_params)
def load_grid(prefix, exp_params, sys_params):
''' Load the position estimates generated by montecarlo_huge(). '''
s = 2 * exp_params['half_span'] + 1
shape = (len(exp_params['pulse_ct']), len(exp_params['sig_n']), s, s, exp_params['trials'])
pos = np.zeros(shape, dtype=np.complex)
for e in range(s):
for n in range(s):
(P, _, _, _) = load(prefix, add=POS_EXT_FMT % (e,n))
pos[:,:,e,n,:] = P
return pos
### SUMARIZE RESULTS ##########################################################
def generate_report(pos, cov, exp_params, sys_params, conf_level, offset=True):
''' Aggregate statistics of simulations.
Inputs:
pos -- A grid of position estimates, elements of type np.complex.
cov -- A grid of covariance estimates, elements either
position.Covariance or position.BootstrapCovariance
'''
# Results
res = { 'cvg_prob' : np.zeros(pos.shape[:-1], dtype=np.float),
'mean' : np.zeros(pos.shape[:-1], dtype=np.complex),
'rmse' : np.zeros(pos.shape[:-1], dtype=np.float),
'area' : np.zeros(pos.shape[:-1], dtype=np.float),
'ecc' : np.zeros(pos.shape[:-1], dtype=np.float),
'recc' : np.zeros(pos.shape[:-1], dtype=np.float),
'angle' : np.zeros(pos.shape[:-1], dtype=np.float),
'avg_area' : np.zeros(pos.shape[:-1], dtype=np.float),
'avg_ecc' : np.zeros(pos.shape[:-1], dtype=np.float),
'area_ratio' : np.zeros(pos.shape[:-1], dtype=np.float) }
Qt = scipy.stats.chi2.ppf(conf_level, 2)
fmt = lambda x : '%9s' % ('%0.2f' % x)
num_sites = len(sys_params['include'])
for e in range(pos.shape[2]): #easting
for n in range(pos.shape[3]): #northing
p = exp_params['center']
if offset:
p += np.complex((n - exp_params['half_span']) * exp_params['scale'],
(e - exp_params['half_span']) * exp_params['scale'])
for i, pulse_ct in enumerate(exp_params['pulse_ct']):
for j, sig_n in enumerate(exp_params['sig_n']):
p_hat = pos[i,j,e,n,:]
mean = np.mean(p_hat)
mean = [mean.imag, mean.real]
rmse = np.sqrt(np.mean(np.abs(p_hat - p) ** 2))# / res.shape[3])
res['mean'][i,j,e,n] = np.complex(mean[1], mean[0])
res['rmse'][i,j,e,n] = rmse
try:
C = np.cov(np.imag(p_hat), np.real(p_hat))
(angle, axes) = position.compute_conf(C, Qt)
E = position.Ellipse(p, angle, axes)
res['area'][i,j,e,n] = E.area()
res['angle'][i,j,e,n] = E.angle
res['ecc'][i,j,e,n] = E.eccentricity()
res['recc'][i,j,e,n] = E.axes[1] / E.axes[0]
except position.PosDefError:
E = None
res['area'][i,j,e,n] = None
res['angle'][i,j,e,n] = None
res['ecc'][i,j,e,n] = None
res['recc'][i,j,e,n] = None
except np.linalg.linalg.LinAlgError:
E = None
res['area'][i,j,e,n] = None
res['angle'][i,j,e,n] = None
res['ecc'][i,j,e,n] = None
res['recc'][i,j,e,n] = None
if cov is not None:
a = b = ct = 0
area = 0
ecc = 0
for k in range(len(cov[i][j][e][n])):
if cov[i][j][e][n][k] is not None:
try:
E_hat = cov[i][j][e][n][k].conf(conf_level)
if E_hat.axes[0] > 0:
area += E_hat.area()
ecc += E_hat.eccentricity()
ct += 1
if p in E_hat: a += 1
if not E or p_hat[k] in E: b += 1
except position.PosDefError:
pass # print "Positive definite!"
if ct == 0:
res['cvg_prob'][i,j,e,n] = None
res['avg_area'][i,j,e,n] = None
res['avg_ecc'][i,j,e,n] = None
res['area_ratio'][i,j,e,n] = None
else:
res['cvg_prob'][i,j,e,n] = float(a) / ct
res['avg_area'][i,j,e,n] = area / ct
res['avg_ecc'][i,j,e,n] = ecc / ct
res['area_ratio'][i,j,e,n] = res['avg_area'][i,j,e,n] / res['area'][i,j,e,n]
else:
res['cvg_prob'][i,j,e,n] = None
res['avg_area'][i,j,e,n] = None
res['avg_ecc'][i,j,e,n] = None
res['area_ratio'][i,j,e,n] = None
return res
def display_report(res, exp_params, sys_params, compute_cov=True, offset=True):
''' Print output of generate_report(). '''
fmt = lambda x : '%9s' % ('%0.2f' % x)
print 'SITES =', sys_params['include'], 'TRIALS = %d' % exp_params['trials']
s = res['rmse'].shape[2]
for e in range(s): #easting
for n in range(s): #northing
p = exp_params['center']
if offset:
p += np.complex((n - exp_params['half_span']) * exp_params['scale'],
(e - exp_params['half_span']) * exp_params['scale'])
print 'TRUE POSITION = (%.2f, %.2f)\n' % (p.imag, p.real)
for i, pulse_ct in enumerate(exp_params['pulse_ct']):
print 'pulse_ct=%d' % pulse_ct
for j, sig_n in enumerate(exp_params['sig_n']):
print ' sig_n=%.3f' % sig_n,
print ' (%s, %s)' % (fmt(res['mean'][i,j,e,n].imag),
fmt(res['mean'][i,j,e,n].real)),
print fmt(res['rmse'][i,j,e,n]),
if compute_cov is True:
if res['cvg_prob'][i,j,e,n] is None:
print 'bad'
else:
print fmt(res['cvg_prob'][i,j,e,n]),
print fmt(res['area'][i,j,e,n]),
print fmt(res['avg_area'][i,j,e,n]),
print fmt(res['avg_area'][i,j,e,n] / res['area'][i,j,e,n])
else:
print fmt(res['area'][i,j,e,n])
### PLOTTING ##################################################################
def plot_grid(fn, exp_params, sys_params, pulse_ct, sig_n, pos=None, nearest=None, alpha=0.1):
i = exp_params['pulse_ct'].index(pulse_ct)
j = exp_params['sig_n'].index(sig_n)
pp.rc('text', usetex=True)
pp.rc('font', family='serif')
fig = pp.gcf()
#fig.set_size_inches(12,10)
ax = fig.add_subplot(111)
ax.axis('equal')
ax.set_xlabel('easting (m)')
ax.set_ylabel('northing (m)')
# Plot sites
(site_ids, P) = zip(*sys_params['sites'].iteritems())
X = np.imag(P)
Y = np.real(P)
pp.xlim([np.min(X) - 100, np.max(X) + 100])
pp.ylim([np.min(Y) - 100, np.max(Y) + 100])
l = np.max(X) - 10; h = np.max(Y) - 20
offset = 20
for (id, (x,y)) in zip(site_ids, zip(X,Y)):
pp.text(x+offset, y+offset, id)
pp.scatter(X, Y, label='sites', facecolors='r', s=10)
# Plot positions.
if pos is not None:
X = np.imag(pos[i,j].flat)
Y = np.real(pos[i,j].flat)
pp.scatter(X, Y, label='estimates', alpha=alpha, facecolors='b', edgecolors='none', s=5)
# Plot grid
offset = 20
s = 2*exp_params['half_span'] + 1
for e in range(s): #easting
for n in range(s): #northing
p = exp_params['center'] + np.complex((n - exp_params['half_span']) * exp_params['scale'],
(e - exp_params['half_span']) * exp_params['scale'])
pp.plot(p.imag, p.real, label='grid', color='w', marker='o', ms=3)
if nearest:
include = nearest_sites(p, sys_params['sites'], nearest)
a = ', '.join(map(lambda(id) : str(id), sorted(include)))
pp.text(p.imag-(offset*7), p.real+(offset), a, fontsize=8)
pp.savefig(fn, dpi=300, bbox_inches='tight')
pp.clf()
def plot_heatmap(fn, data, exp_params, sys_params, thresh=None):
pp.rc('text', usetex=True)
pp.rc('font', family='serif')
fig = pp.gcf()
fig.set_size_inches(5,4.8)
ax = fig.add_subplot(111)
ax.axis('equal')
ax.set_xlabel('easting (m)')
ax.set_ylabel('northing (m)')
d = exp_params['half_span'] * exp_params['scale']
pp.xlim([exp_params['center'].imag - d, exp_params['center'].imag + d])
pp.ylim([exp_params['center'].real - d, exp_params['center'].real + d])
s = 2 * exp_params['half_span'] + 1
a = data[~np.isnan(data)]
print a
if thresh:
c_norm = colors.Normalize(vmin=np.min(a), vmax=np.min(a)+thresh)
else:
c_norm = colors.Normalize(vmin=np.min(a), vmax=np.max(a))
scalar_map = cmx.ScalarMappable(norm=c_norm,cmap='YlGnBu')
for e in range(s):
for n in range(s):
p = exp_params['center'] + np.complex((n - exp_params['half_span']) * exp_params['scale'],
(e - exp_params['half_span']) * exp_params['scale'])
if ~np.isnan(data[e,n]):
b = scalar_map.to_rgba(data[e,n])
pp.scatter(p.imag, p.real, marker='s', color=b, edgecolors='none', s=18, alpha=1)
# Plot sites
(site_ids, P) = zip(*sys_params['sites'].iteritems())
X = np.imag(P)
Y = np.real(P)
offset = 20
for (id, (x,y)) in zip(site_ids, zip(X,Y)):
pp.text(x+offset, y+offset, id)
pp.scatter(X, Y, label='sites', facecolors='r')
pp.savefig(fn, dpi=300, bbox_inches='tight')
pp.clf()
def plot_contour(fn, angle, exp_params, sys_params):
pp.rc('text', usetex=True)
pp.rc('font', family='serif')
fig = pp.gcf()
fig.set_size_inches(9, 8.64)
ax = fig.add_subplot(111)
ax.axis('equal')
ax.set_xlabel('easting (m)')
ax.set_ylabel('northing (m)')
d = exp_params['half_span'] * exp_params['scale']
pp.xlim([exp_params['center'].imag - d, exp_params['center'].imag + d])
pp.ylim([exp_params['center'].real - d, exp_params['center'].real + d])
s = 2 * exp_params['half_span'] + 1
weight = 0.5
lweight = 20
for e in range(s): #easting
for n in range(s): #northing
p = exp_params['center'] + np.complex((n - exp_params['half_span']) * exp_params['scale'],
(e - exp_params['half_span']) * exp_params['scale'])
dx = np.cos(angle[e,n]) * lweight
dy = np.sin(angle[e,n]) * lweight
pp.plot([p.imag - dx/2, p.imag + dx/2],
[p.real - dy/2, p.real + dy/2],
lw=weight, color='k')
# Plot sites
(site_ids, P) = zip(*sys_params['sites'].iteritems())
X = np.imag(P)
Y = np.real(P)
offset = 20
for (id, (x,y)) in zip(site_ids, zip(X,Y)):
pp.text(x+offset, y+offset, id)
pp.scatter(X, Y, label='sites', facecolors='r', zorder=11)
pp.savefig(fn, dpi=300, bbox_inches='tight')
pp.clf()
def plot_distribution(fn, exp_params, sys_params, pulse_ct, sig_n, pos, alpha=0.1):
i = exp_params['pulse_ct'].index(pulse_ct)
j = exp_params['sig_n'].index(sig_n)
e = 0; n = 0;
pp.rc('text', usetex=True)
pp.rc('font', family='serif')
fig = pp.gcf()
fig.set_size_inches(4,2)
ax = fig.add_subplot(111)
ax.axis('equal')
ax.set_xlabel('easting (m)')
ax.set_ylabel('northing (m)')
X = np.imag(pos[i,j,e,n].flat)
Y = np.real(pos[i,j,e,n].flat)
pp.scatter(X, Y, label='estimates', alpha=alpha, facecolors='b', edgecolors='none', s=5)
pp.xlim([np.min(X) - 0, np.max(X) + 0])
pp.ylim([np.min(Y) - 0, np.max(Y) + 0])
l = np.max(X) - 10; h = np.max(Y) - 10
p = exp_params['center'] + np.complex((n - exp_params['half_span']) * exp_params['scale'],
(e - exp_params['half_span']) * exp_params['scale'])
pp.plot(p.imag, p.real, label='grid', color='w', marker='o', ms=5)
pp.savefig(fn, dpi=300, bbox_inches='tight')
pp.clf()
def plot_distance(fn, pos, exp_params, sys_params, pulse_ct, sig_n, conf_level, step):
i = exp_params['pulse_ct'].index(pulse_ct)
j = exp_params['sig_n'].index(sig_n)
Qt = scipy.stats.chi2.ppf(conf_level, 2)
pp.rc('text', usetex=True)
pp.rc('font', family='serif')
fig = pp.gcf()
#fig.set_size_inches(8,6)
ax = fig.add_subplot(111)
#ax.axis('equal')
ax.set_xlabel('Distance to site 1 (m)')
ax.set_ylabel('Eccentricity of ellipse')
# Eccentricity of confidence intervals
p = exp_params['center']
dist2 = np.abs(p - sys_params['sites'][1])
D = [] # distance
E = [] # eccentricity
for (k, P) in enumerate(pos):
C = np.cov(np.imag(P[i,j,:,:,:].flat), np.real(P[i,j,:,:,:].flat))
(angle, axes) = position.compute_conf(C, Qt)
D.append(dist2 + (step * k))
E.append(position.Ellipse(p, angle, axes).eccentricity())
pp.plot(D, E)
l = 300; h = 0.17
pp.text(l, h, '$\sigma_n^2=%0.3f$' % exp_params['sig_n'][j])
pp.text(l, h-0.033, '$%d$ samples/site' % exp_params['pulse_ct'][i])
#pp.title('Varying distance, {0}\%-confidence'.format(int(100 * conf_level)))
pp.savefig(fn, dpi=300, bbox_inches='tight')
pp.clf()
def plot_angular(fn, pos, site2_pos, exp_params, sys_params, pulse_ct, sig_n, conf_level, step):
i = exp_params['pulse_ct'].index(pulse_ct)
j = exp_params['sig_n'].index(sig_n)
Qt = scipy.stats.chi2.ppf(conf_level, 2)
pp.rc('text', usetex=True)
pp.rc('font', family='serif')
f, axarr = pp.subplots(2, sharex=True)
# Plot position
p = exp_params['center']
# Confidence intervals
angle = []
orientation = []
eccentricity = []
for (k, P) in enumerate(pos): # Plot positions.
C = np.cov(np.imag(P[i,j,:,:,:].flat), np.real(P[i,j,:,:,:].flat))
E = position.Ellipse(p, *position.compute_conf(C, Qt))
angle.append((180 * (k+1)) / step)
orientation.append((180 * E.angle / np.pi) % 180)
eccentricity.append(E.eccentricity())
axarr[0].plot(angle, orientation)
axarr[0].set_ylabel('Orientation of major axis')
axarr[1].plot(angle, eccentricity)
axarr[1].set_ylabel('Eccentricity')
#axarr[0].set_title('Varying angle, {0}\%-confidence'.format(int(100 * conf_level)))
axarr[1].set_xlabel('Angle between sites 0 and 1')
pp.savefig(fn, dpi=300, bbox_inches='tight')
pp.clf()
def plot_rmse(fn, pos, p, exp_params, sys_params):
x = position.transform_coord(p, exp_params['center'],
exp_params['half_span'], exp_params['scale'])
e = x[0]; n = x[1]
pp.rc('text', usetex=True)
pp.rc('font', family='serif')
fig = pp.gcf()
fig.set_size_inches(6,4)
ax = fig.add_subplot(111)
ax.set_xlabel('Samples per site')
ax.set_ylabel('$\\textsc{Rmse}$')
for (j, sig_n) in enumerate(exp_params['sig_n']):
rmse = []
for (i, pulse_ct) in enumerate(exp_params['pulse_ct']):
rmse.append(
np.sqrt(np.mean(np.abs(pos[i,j,e,n,:] - p) ** 2)))
pp.plot(exp_params['pulse_ct'], rmse, label='$\sigma_n^2=%0.3f$' % sig_n)
#pp.legend(title='Noise level', ncol=2)
pp.savefig(fn, dpi=300, bbox_inches='tight')
pp.clf()
def plot_area(fn, pos, p, exp_params, sys_params, conf_level, cov=None):
x = position.transform_coord(p, exp_params['center'],
exp_params['half_span'], exp_params['scale'])
e = x[0]; n = x[1]
Qt = scipy.stats.chi2.ppf(conf_level, 2)
pp.rc('text', usetex=True)
pp.rc('font', family='serif')
fig = pp.gcf()
fig.set_size_inches(6,4)
ax = fig.add_subplot(111)
ax.set_xlabel('Samples per site')
ax.set_ylabel('Area of {0}\%--conf. region (m$^2$)'.format(int(100 * conf_level)))
for (j, sig_n) in enumerate(exp_params['sig_n']):
area = []
for (i, pulse_ct) in enumerate(exp_params['pulse_ct']):
p_hat = pos[i,j,e,n,:]
C = np.cov(np.imag(p_hat), np.real(p_hat))
(angle, axes) = position.compute_conf(C, Qt)
area.append(
position.Ellipse(p, angle, axes).area())
pp.plot(exp_params['pulse_ct'], area, label='$\sigma_n^2=%0.3f$' % sig_n)
pp.legend(title='Noise level', ncol=2)
pp.savefig(fn, dpi=300, bbox_inches='tight')
pp.clf()
### EXPERIMENTS ###############################################################
def one_test(db_con, prefix, conf_level):
''' Idealized receivers, ideal geometry -- figure 7. '''
cal_id = 6
sv = signal.SteeringVectors(db_con, cal_id, include=[0])
sv.steering_vectors[1] = sv.steering_vectors[0]
sv.bearings[1] = sv.bearings[0]
sv.sv_id[1] = sv.sv_id[0]
sites = { 0 : (0+100j),
1 : (100+0j) }
exp_params = { 'rho' : 1,
'sig_n' : [0.001, 0.002, 0.005, 0.01, 0.02, 0.05, 0.1],
'pulse_ct' : [1,2,3,4,5,6,7,8,9,10],
'center' : (0+0j),
'half_span' : 0,
'scale' : 1,
'trials' : 10000 }
sys_params = { 'method' : 'bartlet',
'include' : [],
'sites' : sites.copy() }
# Run simulations, save results
(pos, cov) = montecarlo(exp_params, sys_params, sv, compute_cov=False)
save(prefix, pos, cov, exp_params, sys_params)
# Plot results
(pos, _, exp_params, sys_params) = load(prefix)
plot_rmse('rmse.png', pos, exp_params['center'], exp_params, sys_params)
plot_area('area.png', pos, exp_params['center'], exp_params, sys_params, 0.95)
plot_grid('noise-sample-ill.png', exp_params, sys_params, 5, 0.1, pos)
# one_test()
def distance_test(db_con, prefix, center, conf_level):
''' Idealized receivers, varying distance -- figure 8. '''
cal_id = 6
sv = signal.SteeringVectors(db_con, cal_id, include=[0])
sv.steering_vectors[1] = sv.steering_vectors[0]
sv.bearings[1] = sv.bearings[0]
sv.sv_id[1] = sv.sv_id[0]
sites = { 0 : (0+100j),
1 : (100+0j) }
exp_params = { 'rho' : 1,
'sig_n' : [0.005],
'pulse_ct' : [5],
'center' : (0+0j),
'half_span' : 0,
'scale' : 1,
'trials' : 10000 }
sys_params = { 'method' : 'bartlet',
'include' : [],
'center' : center,
'sites' : sites.copy() }
pos = [] # Sequence of position estimates for varying distance.
step = 5 # distance in meters to move site 1.
for i in range(50):
# Run simulations.
(P, cov) = montecarlo(exp_params, sys_params, sv, compute_cov=False)
save(prefix + str(i), P, cov, exp_params, sys_params)
# Load results.
(P, _, exp_params, sys_params) = load(prefix + str(i))
sys_params['sites'][1] += step
pos.append(P)
sys_params['sites'] = sites
# Plot results.
plot_distance('dist.png', pos, exp_params, sys_params,
exp_params['pulse_ct'][0], exp_params['sig_n'][0], conf_level, step)
plot_distribution('dist-ill.png', exp_params, sys_params,
exp_params['pulse_ct'][0], exp_params['sig_n'][0], pos[20], alpha=0.1)
def angular_test(db_con, prefix, center, conf_level):
''' Idealized receivers, varying angle -- figure 8. '''
cal_id = 6
sv = signal.SteeringVectors(db_con, cal_id, include=[0])
sv.steering_vectors[1] = sv.steering_vectors[0]
sv.bearings[1] = sv.bearings[0]
sv.sv_id[1] = sv.sv_id[0]
sites = { 0 : (0+100j),
1 : (0-100j) }
exp_params = { 'rho' : 1,
'sig_n' : [0.005],
'pulse_ct' : [5],
'center' : (0+0j),
'half_span' : 0,
'scale' : 1,
'trials' : 10000 }
sys_params = { 'method' : 'bartlet',
'include' : [],
'center' : center,
'sites' : sites.copy() }
step = 40 # Number of increments
# NOTE if `step` is too large than the position estimator won't
# converge on extreme angleso!
p = np.array([sys_params['sites'][0].imag,
sys_params['sites'][0].real])
c = np.array([exp_params['center'].imag,
exp_params['center'].real])
pos = []; site2_pos = []
for i in range(step-1):
theta = (np.pi * (i+1)) / step
A = np.array([[ np.cos(theta), np.sin(theta) ],
[ -np.sin(theta), np.cos(theta) ]])
b = np.dot(A, p-c) + c
site2_pos.append(b)
sys_params['sites'][1] = np.complex(b[1], b[0])
# Run Simulations
(P, cov) = montecarlo(exp_params, sys_params, sv, compute_cov=False)
save(prefix + str(i), P, cov, exp_params, sys_params)
# Load results
(P, cov, exp_params, sys_params) = load(prefix + str(i))
pos.append(P)
site2_pos = np.vstack(site2_pos)
plot_angular('angle.png', pos, site2_pos, exp_params, sys_params,
exp_params['pulse_ct'][0], exp_params['sig_n'][0], conf_level, step)
plot_distribution('angle-ill.png', exp_params, sys_params,
exp_params['pulse_ct'][0], exp_params['sig_n'][0], pos[30], alpha=0.1)
def grid_test(prefix, center, sites, sv, conf_level):
''' Performance of covariance estimates, figures 10 and 11. '''
exp_params = { 'rho' : 1,
'sig_n' : [0.001, 0.002, 0.005, 0.01, 0.02, 0.05, 0.1],
'pulse_ct' : [2,4,6,8,10],
'center' : (4260738.3+574549j),
'half_span' : 2,
'scale' : 350,
'trials' : 1000 }
sys_params = { 'method' : 'bartlet',
'include' : [],
'center' : center,
'sites' : sites }
# Run simulations.
montecarlo_huge(prefix, exp_params, sys_params,
sv, compute_cov=True, nearest=3)
# Load and plot grid. (figure 10)
pos = load_grid(prefix, exp_params, sys_params)
plot_grid('grid.png', exp_params, sys_params, 6, 0.005, pos, nearest=3)
# Generate and save summary statistics.
s = 2 * exp_params['half_span'] + 1
shape = (len(exp_params['pulse_ct']), len(exp_params['sig_n']), s, s)
asym_res = { 'cvg_prob' : np.zeros(shape, dtype=np.float),
'mean' : np.zeros(shape, dtype=np.complex),
'rmse' : np.zeros(shape, dtype=np.float),
'area' : np.zeros(shape, dtype=np.float),
'ecc' : np.zeros(shape, dtype=np.float),
'avg_area' : np.zeros(shape, dtype=np.float),
'avg_ecc' : np.zeros(shape, dtype=np.float),
'area_ratio' : np.zeros(shape, dtype=np.float) }
boot_res = copy.deepcopy(asym_res)
center = exp_params['center']
s = 2 * exp_params['half_span'] + 1
shape = (len(exp_params['pulse_ct']), len(exp_params['sig_n']), 1, 1, exp_params['trials'])
for e in range(s):
for n in range(s):
print e,n
(P, cov, _, _) = load(prefix, add=POS_EXT_FMT % (e,n))
pos = np.zeros(shape, dtype=np.complex)
pos[:,:,0,0,:] = P
cov_asym = create_array_from_shape(shape)
cov_boot = create_array_from_shape(shape)
for i in range(shape[0]):
for j in range(shape[1]):
cov_asym[i][j][0][0] = cov[0][i][j]
cov_boot[i][j][0][0] = cov[1][i][j]
p = center + np.complex((n - exp_params['half_span']) * exp_params['scale'],
(e - exp_params['half_span']) * exp_params['scale'])
exp_params['center'] = p
asym = generate_report(pos, cov_asym, exp_params, sys_params, conf_level, offset=False)
boot = generate_report(pos, cov_boot, exp_params, sys_params, conf_level, offset=False)
for key in asym_res.keys():
asym_res[key][:,:,e,n] = asym[key][:,:,0,0]
boot_res[key][:,:,e,n] = boot[key][:,:,0,0]
exp_params['center'] = center
pickle.dump((asym_res, boot_res), open(prefix + '-stats', 'w'))
# Plot summary statistics. (figure 11)
(asym_res, boot_res) = pickle.load(open(prefix + '-stats'))
I = len(exp_params['pulse_ct'])
J = len(exp_params['sig_n'])
feature = 'cvg_prob'
title = 'Coverage probability'
mean = np.zeros((2,I,J), dtype=np.float)
std = np.zeros((2,I,J), dtype=np.float)
for i in range(I):
for j in range(J):
A = asym_res[feature][i,j].flat[~np.isnan(asym_res[feature][i,j].flat)]
mean[0,i,j] = np.mean(A)
std[0,i,j] = np.std(A)
B = boot_res[feature][i,j].flat[~np.isnan(boot_res[feature][i,j].flat)]
mean[1,i,j] = np.mean(B)
std[1,i,j] = np.std(B)
pp.rc('text', usetex=True)
pp.rc('font', family='serif')
fig, axs = pp.subplots(nrows=1, ncols=2, sharex=True)
fig.set_size_inches(10,3.5)
ax0 = axs[0]
ax0.set_xscale('log')
ax0.set_xlim([exp_params['sig_n'][0]/2, exp_params['sig_n'][-1]*2])
ax0.set_xlabel('$\sigma_n^2$')
ax0.set_ylabel('Coverage probability')
ax0.set_title('Asymptotic')
ax1 = axs[1]
ax1.set_xscale('log')
ax1.set_title('Bootstrap')
ax1.set_xlim([exp_params['sig_n'][0]/2, exp_params['sig_n'][-1]*2])
ax1.set_xlabel('$\sigma_n^2$')
for i, pulse_ct in enumerate(exp_params['pulse_ct']):
ax0.errorbar(exp_params['sig_n'], mean[0,i,:], yerr=std[0,i,:],
fmt='o', label='%d' % pulse_ct)