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NAMESPACE
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NAMESPACE
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# Generated by roxygen2: do not edit by hand
export(fetch_files)
export(process_study)
export(save_gating_sets)
importFrom(ImmPortR,download_immport)
importFrom(ImmPortR,list_immport)
importFrom(ImmPortR,query_datarelversion)
importFrom(ImmPortR,query_filePath)
importFrom(ImmPortR,query_findAllStudyAccessions)
importFrom(assertthat,assert_that)
importFrom(assertthat,is.dir)
importFrom(assertthat,is.writeable)
importFrom(assertthat,not_empty)
importFrom(cytoqc,cqc_check)
importFrom(cytoqc,cqc_fix)
importFrom(cytoqc,cqc_load_fcs)
importFrom(cytoqc,cqc_match)
importFrom(cytoqc,cqc_match_remove)
importFrom(cytoqc,cqc_match_update)
importFrom(diptest,dip.test)
importFrom(flowClust,flowClust)
importFrom(flowClust,getEstimates)
importFrom(flowCore,description)
importFrom(flowCore,ellipsoidGate)
importFrom(flowCore,exprs)
importFrom(flowCore,getChannelMarker)
importFrom(flowCore,read.FCSheader)
importFrom(flowCore,rectangleGate)
importFrom(flowCore,spillover)
importFrom(flowWorkspace,"colnames<-")
importFrom(flowWorkspace,"markernames<-")
importFrom(flowWorkspace,"pData<-")
importFrom(flowWorkspace,"phenoData<-")
importFrom(flowWorkspace,GatingSet)
importFrom(flowWorkspace,cf_keyword_insert)
importFrom(flowWorkspace,colnames)
importFrom(flowWorkspace,compensate)
importFrom(flowWorkspace,cs_get_h5_file_path)
importFrom(flowWorkspace,cytoset)
importFrom(flowWorkspace,gh_get_pop_paths)
importFrom(flowWorkspace,gh_pop_get_data)
importFrom(flowWorkspace,gh_pop_get_gate)
importFrom(flowWorkspace,gh_pop_set_gate)
importFrom(flowWorkspace,gs_get_pop_paths)
importFrom(flowWorkspace,gs_pop_add)
importFrom(flowWorkspace,gs_pop_get_data)
importFrom(flowWorkspace,gs_pop_get_gate)
importFrom(flowWorkspace,gs_pop_get_parent)
importFrom(flowWorkspace,gs_pop_get_stats)
importFrom(flowWorkspace,gs_pop_remove)
importFrom(flowWorkspace,gs_pop_set_gate)
importFrom(flowWorkspace,lapply)
importFrom(flowWorkspace,load_cytoset_from_fcs)
importFrom(flowWorkspace,load_gs)
importFrom(flowWorkspace,markernames)
importFrom(flowWorkspace,pData)
importFrom(flowWorkspace,phenoData)
importFrom(flowWorkspace,recompute)
importFrom(flowWorkspace,sampleNames)
importFrom(flowWorkspace,save_cytoset)
importFrom(flowWorkspace,save_gs)
importFrom(flowWorkspace,transform)
importFrom(flowWorkspace,transformerList)
importFrom(ggcyto,autoplot)
importFrom(ggcyto,ggcyto)
importFrom(ggcyto,ggcyto_arrange)
importFrom(ggplot2,aes)
importFrom(ggplot2,aes_)
importFrom(ggplot2,facet_grid)
importFrom(ggplot2,facet_null)
importFrom(ggplot2,facet_wrap)
importFrom(ggplot2,geom_density)
importFrom(ggplot2,geom_path)
importFrom(ggplot2,geom_polygon)
importFrom(ggplot2,geom_vline)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,ggsave)
importFrom(ggplot2,ggtitle)
importFrom(ggplot2,guide_legend)
importFrom(ggplot2,guides)
importFrom(ggplot2,labs)
importFrom(ggplot2,stat)
importFrom(ggplot2,stat_function)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_light)
importFrom(ggplot2,xlab)
importFrom(ggplot2,xlim)
importFrom(ggplot2,ylab)
importFrom(ggplot2,ylim)
importFrom(gtools,mixedorder)
importFrom(gtools,mixedsort)
importFrom(jsonlite,toJSON)
importFrom(methods,as)
importFrom(methods,is)
importFrom(methods,new)
importFrom(mime,guess_type)
importFrom(openCyto,gate_mindensity2)
importFrom(openCyto,gatingTemplate)
importFrom(openCyto,gs_add_gating_method)
importFrom(openCyto,gt_gating)
importFrom(openCyto,register_plugins)
importFrom(parallel,detectCores)
importFrom(parallel,mclapply)
importFrom(pheatmap,pheatmap)
importFrom(rmarkdown,render)
importFrom(scales,trans_new)
importFrom(slurmR,Slurm_lapply)
importFrom(slurmR,opts_slurmR)
importFrom(slurmR,slurm_available)
importFrom(stats,cov)
importFrom(stats,density)
importFrom(stats,dist)
importFrom(stats,ecdf)
importFrom(stats,qchisq)
importFrom(stats,t.test)
importFrom(utils,packageDescription)
importFrom(utils,packageVersion)
importFrom(utils,tail)
importFrom(xfun,base64_encode)