You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
sorry, when I run"devtools::install_github("RGLab/cytolib")",there is still an error:
devtools::install_github("RGLab/cytolib")
Downloading GitHub repo RGLab/cytolib@HEAD
These packages have more recent versions available.
It is recommended to update all of them.
Which would you like to update?
1: All
2: CRAN packages only
3: None
4: Rhdf5lib (1.18.2 -> 1.20.0 ) [CRAN]
5: BH (1.78.0-0 -> 1.81.0-1) [CRAN]
Enter one or more numbers, or an empty line to skip updates: 3
✔ checking for file ‘/private/var/folders/st/7qpxbzfj6gl6tpcp2739bwnr0000gn/T/RtmpFXGz0O/remotes7a4760258550/RGLab-cytolib-24e6c07/DESCRIPTION’ ...
─ preparing ‘cytolib’:
✔ checking DESCRIPTION meta-information
─ cleaning src
─ running ‘cleanup’
─ checking for LF line-endings in source and make files and shell scripts (1.5s)
─ checking for empty or unneeded directories
─ building ‘cytolib_2.11.1.tar.gz’
installing source package ‘cytolib’ ...
** using staged installation
checking for a sed that does not truncate output... /usr/bin/sed
checking for g++... g++
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking how to run the C++ preprocessor... g++ -E
checking whether we are using the GNU C++ compiler... (cached) yes
checking whether g++ accepts -g... (cached) yes
configure: Parsing cytolib version info ...
configure: CYTOLIB_VERSION=2.11.1
configure: creating ./config.status
config.status: creating inst/include/cytolib/cytolibConfig.h
config.status: creating src/Makevars
** libs
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DROUT -I../inst/include -DBOOST_NO_AUTO_PTR -DBOOST_FILESYSTEM_NO_CXX20_ATOMIC_REF -DBOOST_FILESYSTEM_SINGLE_THREADED -I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RProtoBufLib/include' -I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rhdf5lib/include' -I/usr/local/include -fPIC -Wall -g -O2 -c dummy.cpp -o dummy.o
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DROUT -I../inst/include -DBOOST_NO_AUTO_PTR -DBOOST_FILESYSTEM_NO_CXX20_ATOMIC_REF -DBOOST_FILESYSTEM_SINGLE_THREADED -I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RProtoBufLib/include' -I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rhdf5lib/include' -I/usr/local/include -fPIC -Wall -g -O2 -c boost/libs/system/src/error_code.cpp -o boost/libs/system/src/error_code.o
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DROUT -I../inst/include -DBOOST_NO_AUTO_PTR -DBOOST_FILESYSTEM_NO_CXX20_ATOMIC_REF -DBOOST_FILESYSTEM_SINGLE_THREADED -I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RProtoBufLib/include' -I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rhdf5lib/include' -I/usr/local/include -fPIC -Wall -g -O2 -c boost/libs/filesystem/src/codecvt_error_category.cpp -o boost/libs/filesystem/src/codecvt_error_category.o
boost/libs/filesystem/src/codecvt_error_category.cpp:18:10: fatal error: 'boost/filesystem/detail/path_traits.hpp' file not found
#include <boost/filesystem/detail/path_traits.hpp>
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1 error generated.
make: *** [boost/libs/filesystem/src/codecvt_error_category.o] Error 1
ERROR: compilation failed for package ‘cytolib’
removing ‘/Library/Frameworks/R.framework/Versions/4.2/Resources/library/cytolib’
restoring previous ‘/Library/Frameworks/R.framework/Versions/4.2/Resources/library/cytolib’
Warning message:
In i.p(...) :
‘/var/folders/st/7qpxbzfj6gl6tpcp2739bwnr0000gn/T//RtmpFXGz0O/file7a473f537880/cytolib_2.11.1.tar.gz’ had non-zero exit status
The text was updated successfully, but these errors were encountered:
sorry, when I run"devtools::install_github("RGLab/cytolib")",there is still an error:
devtools::install_github("RGLab/cytolib")
Downloading GitHub repo RGLab/cytolib@HEAD
These packages have more recent versions available.
It is recommended to update all of them.
Which would you like to update?
1: All
2: CRAN packages only
3: None
4: Rhdf5lib (1.18.2 -> 1.20.0 ) [CRAN]
5: BH (1.78.0-0 -> 1.81.0-1) [CRAN]
Enter one or more numbers, or an empty line to skip updates: 3
✔ checking for file ‘/private/var/folders/st/7qpxbzfj6gl6tpcp2739bwnr0000gn/T/RtmpFXGz0O/remotes7a4760258550/RGLab-cytolib-24e6c07/DESCRIPTION’ ...
─ preparing ‘cytolib’:
✔ checking DESCRIPTION meta-information
─ cleaning src
─ running ‘cleanup’
─ checking for LF line-endings in source and make files and shell scripts (1.5s)
─ checking for empty or unneeded directories
─ building ‘cytolib_2.11.1.tar.gz’
installing source package ‘cytolib’ ...
** using staged installation
checking for a sed that does not truncate output... /usr/bin/sed
checking for g++... g++
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking how to run the C++ preprocessor... g++ -E
checking whether we are using the GNU C++ compiler... (cached) yes
checking whether g++ accepts -g... (cached) yes
configure: Parsing cytolib version info ...
configure: CYTOLIB_VERSION=2.11.1
configure: creating ./config.status
config.status: creating inst/include/cytolib/cytolibConfig.h
config.status: creating src/Makevars
** libs
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DROUT -I../inst/include -DBOOST_NO_AUTO_PTR -DBOOST_FILESYSTEM_NO_CXX20_ATOMIC_REF -DBOOST_FILESYSTEM_SINGLE_THREADED -I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RProtoBufLib/include' -I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rhdf5lib/include' -I/usr/local/include -fPIC -Wall -g -O2 -c dummy.cpp -o dummy.o
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DROUT -I../inst/include -DBOOST_NO_AUTO_PTR -DBOOST_FILESYSTEM_NO_CXX20_ATOMIC_REF -DBOOST_FILESYSTEM_SINGLE_THREADED -I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RProtoBufLib/include' -I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rhdf5lib/include' -I/usr/local/include -fPIC -Wall -g -O2 -c boost/libs/system/src/error_code.cpp -o boost/libs/system/src/error_code.o
clang++ -mmacosx-version-min=10.13 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DROUT -I../inst/include -DBOOST_NO_AUTO_PTR -DBOOST_FILESYSTEM_NO_CXX20_ATOMIC_REF -DBOOST_FILESYSTEM_SINGLE_THREADED -I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/BH/include' -I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/RProtoBufLib/include' -I'/Library/Frameworks/R.framework/Versions/4.2/Resources/library/Rhdf5lib/include' -I/usr/local/include -fPIC -Wall -g -O2 -c boost/libs/filesystem/src/codecvt_error_category.cpp -o boost/libs/filesystem/src/codecvt_error_category.o
boost/libs/filesystem/src/codecvt_error_category.cpp:18:10: fatal error: 'boost/filesystem/detail/path_traits.hpp' file not found
#include <boost/filesystem/detail/path_traits.hpp>
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1 error generated.
make: *** [boost/libs/filesystem/src/codecvt_error_category.o] Error 1
ERROR: compilation failed for package ‘cytolib’
removing ‘/Library/Frameworks/R.framework/Versions/4.2/Resources/library/cytolib’
restoring previous ‘/Library/Frameworks/R.framework/Versions/4.2/Resources/library/cytolib’
Warning message:
In i.p(...) :
‘/var/folders/st/7qpxbzfj6gl6tpcp2739bwnr0000gn/T//RtmpFXGz0O/file7a473f537880/cytolib_2.11.1.tar.gz’ had non-zero exit status
The text was updated successfully, but these errors were encountered: