App redesign - change to leafgl and rhino

[RWParsons]

To expand on the following point in Jace's list:

[ ] BIG ONE: move iTRAQI_app into a subdirectory of iTRAQI-anlayses (this repo) and make it as a rhino app with the same renv. It's much too hard to maintain across two repositories as they share a lot of the same data. Need to move to rhino app since it's impossible to look at the old app as it is much too large.

• use rhino framework
• use outputs from analyses pipeline
• recreate maps tab using leafgl
  • layer selection
    • polygons 989275f
    • make transition between displayed shapes faster by adding new layer before a show and then hide/remove old layer bf1a1e9
    • popups on polygons be8bdd8
    • rasters 63967ad
    • add legends f91cdc6
  • filters dc0d8d7
  • complete base map with RSQ/aero/centre icons 99f3e95
  • interactive plot
    • base plot that's reactive to 'show plot' checkbox 1365e9d
    • visibility of points dependent on filters ae4193b
    • colour scales on plot dependent on layer selected (acute/rehab/index) 74510c1
    • hide 'show_plot' button if selected layer is not a polygon 72be097
    • implement brush and click interactivity to the plot/map b524bd7
  • time-to-care prediction from map click
    • make new marker with predicted acute/rehab time in popup cb31b6c
    • automatically trigger popup to appear shortly after marker is added a63d43c
    • remove prediction marker when marker is clicked db713fb
  • add spinner/waiter with fun fact(oid)s eddc5d9
• recreate tour tab using leafgl
  • create structure for progressing/regressing through tour 3abeaa5
  • associated card content with the tour stage 13b07ff
  • associated map content with the tour stage c0d67d3
  • incorporate map view/panning with tour stages 42ed505
• recreate info tab 1313335
• recreate downloads tab bf09223
• replace rhino logo with an iTRAQI logo 25b2493

misc. features/changes/bug fixes

• update marker popup text from within pipeline 179eaec
• check that the user hasn't changed tour tab before the delayed map pan occurs fb83a48
• add linters https://www.appsilon.com/post/box-linters-in-rhino-1-8-0 fd6ea0f
• output all app inputs straight into app directories to replace the update-data.R script a206670
• fix the (lack of) appearance of acute/rehab raster layer on tour da65cdd
• need to be able to change the map popups on shapes to be labels so that the map_click event can trigger the creation of a prediction marker and it's popup, not the display of the shape popup. Following the recent developments on leafgl for this here: Label argument not working r-spatial/leafgl#78
  • wait for the above PR to get accepted and merged into leafgl.
  • change what are currently polygon popups to be labels (hover, rather than click to show)
  • adjust the z-index of markers/labels/layers etc so that order is correct and center markers don't appear above polygon popups/labels
  • ensure that prediction markers work as expected and aren't hidden behind polygon labels
• avoid rsq and qas markers appearing on map load when not default tab 974b29a
• put markers at higher z-index than polygons ae04bc7
• produce empty map without error when filter removes all polygons from map 9b03e02

[jacellewarren]

Thanks for this list too, Rex!

[RWParsons]

Closing this issue as it seems that the changes in leafgl are taking ages to happen and mapgl looks like a potentially better option. See #4.