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vscode-snippets.code-snippets
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{
// Place your global snippets here. Each snippet is defined under a snippet name and has a scope, prefix, body and
// description. Add comma separated ids of the languages where the snippet is applicable in the scope field. If scope
// is left empty or omitted, the snippet gets applied to all languages. The prefix is what is
// used to trigger the snippet and the body will be expanded and inserted. Possible variables are:
// $1, $2 for tab stops, $0 for the final cursor position, and ${1:label}, ${2:another} for placeholders.
// Placeholders with the same ids are connected.
// Example:
// "Print to console": {
// "scope": "javascript,typescript",
// "prefix": "log",
// "body": [
// "console.log('$1');",
// "$2"
// ],
// "description": "Log output to console"
// }
// Roberts Lab resources links
"Genomic Resources Handbook page": {
"prefix": "Genomic Resources",
"body": "[Genomic Resources Handbook page](https://robertslab.github.io/resources/Genomic-Resources/)$0",
"description": "Genomic Resources link"
},
// Animal genus and species with links to corresponding Wikipedia links.
"Chionoecetes bairdi": {
"prefix": "Chionoecetes bairdi",
"body": "[_Chionoecetes bairdi_ (Tanner crab)](http://en.wikipedia.org/wiki/Chionoecetes_bairdi)$0"
},
"Chionoecetes opilio": {
"prefix": "Chionoecetes opilio",
"body": "[_Chionoecetes opilio_ (Snow crab)](https://en.wikipedia.org/wiki/Chionoecetes_opilio)$0"
},
"Crassostrea gigas": {
"prefix": "Crassostrea gigas",
"body": "[_Crassostrea gigas_ (Pacific oyster)](http://en.wikipedia.org/wiki/Pacific_oyster)$0"
},
"Crassostrea virginica": {
"prefix": "Crassostrea virginica",
"body": "[_Crassostrea virginica_ (Eastern oyster)](https://en.wikipedia.org/wiki/Eastern_oyster)$0"
},
"Eastern oyster": {
"prefix": "Eastern oyster",
"body": "[Eastern oyster (_Crassostrea virginica_)](https://en.wikipedia.org/wiki/Eastern_oyster)$0"
},
"Lake trout": {
"prefix": "Lake trout",
"body": "[_Salvelinus namaycush_](https://en.wikipedia.org/wiki/Lake_trout)$0"
},
"Mytilus trossulus": {
"prefix": "Mytilus trossulus",
"body": "[_Mytilus trossulus_ (bay mussel)](https://en.wikipedia.org/wiki/Mytilus_trossulus)$0"
},
"Oncorhynchus nerka": {
"prefix": "Oncorhynchus nerka",
"body": "[_Oncorhynchus nerka_ (sockeye salmon)](https://en.wikipedia.org/wiki/Sockeye_salmon)$0"
},
"Ostrea lurida": {
"prefix": "Ostrea lurida",
"body": "[_Ostrea lurida_ (Olympia oyster)](http://en.wikipedia.org/wiki/Pacific_oyster)$0"
},
"Olympia oyster": {
"prefix": "Olympia oyster",
"body": "[Olympia oyster (_Ostrea lurida_)](http://en.wikipedia.org/wiki/Pacific_oyster)$0"
},
"Pacific geoduck": {
"prefix": "Pacific geoduck",
"body": "[Pacific geoduck (_Panopea generosa_)](http://en.wikipedia.org/wiki/Geoduck)$0"
},
"Pacific oyster": {
"prefix": "Pacific oyster",
"body": "[Pacific oyster (_Crassostrea gigas_)](http://en.wikipedia.org/wiki/Pacific_oyster)$0"
},
"Panopea generosa": {
"prefix": "Panopea generosa",
"body": "[_Panopea generosa_ (Pacific geoduck)](http://en.wikipedia.org/wiki/Geoduck)$0"
},
"Salvelinus namaycush": {
"prefix": "Salvelinus namaycush",
"body": "[_Salvelinus namaycush_](https://en.wikipedia.org/wiki/Lake_trout)$0"
},
"Tanner crab": {
"prefix": "Tanner crab",
"body": "[Tanner crab (_Chionoecetes bairdi_)](http://en.wikipedia.org/wiki/Chionoecetes_bairdi)$0"
},
// Software links
"bcftools": {
"prefix": "bcftools",
"body": "[`bcftools`](https://samtools.github.io/bcftools/bcftools.html#common_options)$0"
},
"Bismark link": {
"prefix": "Bismark",
"body": "[`Bismark`](https://github.com/FelixKrueger/Bismark)$0"
},
"BLAST link": {
"prefix": "BLAST",
"body": "[`BLAST`](https://www.ncbi.nlm.nih.gov/books/NBK279690/)$0"
},
"Bowtie2 link": {
"prefix": "Bowtie2",
"body": "[`bowtie2`](https://github.com/BenLangmead/bowtie2)$0"
},
"Circos link": {
"prefix": "Circos",
"body": "[Circos](http://circos.ca/)$0"
},
"Cutadapt link": {
"prefix": "cutadapt",
"body": "[`cutadapt`](https://cutadapt.readthedocs.io/en/stable/index.html)$0"
},
"DIAMOND link": {
"prefix": "DIAMOND",
"body": "[`DIAMOND`](https://github.com/bbuchfink/diamond)$0"
},
"Fastp link": {
"prefix": "fastp",
"body": "[`fastp`](https://github.com/OpenGene/fastp)$0"
},
"FastQC link": {
"prefix": "fastqc",
"body": "[`FastQC`](https://www.bioinformatics.babraham.ac.uk/projects/fastqc/)$0"
},
"MultiQC link": {
"prefix": "MultiQC",
"body": "[`MultiQC`](https://multiqc.info/)$0"
},
"HISAT2 link": {
"prefix": "HISAT2",
"body": "[`HISAT2`](https://daehwankimlab.github.io/hisat2/)$0"
},
"Nightingales link": {
"prefix": "Nightingales",
"body": "[`Nightingales`](https://b.link/nightingales) (Google Sheet)$0"
},
"STAR link": {
"prefix": "STAR",
"body": "[`STAR`](https://github.com/alexdobin/STAR)$0"
},
"TrimGalore link": {
"prefix": "TrimGalore",
"body": "[`TrimGalore`](https://github.com/FelixKrueger/TrimGalore)$0"
},
"SeqKit link": {
"prefix": "SeqKit",
"body": "[`SeqKit`](https://bioinf.shenwei.me/seqkit/)$0"
},
"StringTie link": {
"prefix": "StringTie",
"body": "[`StringTie`](https://ccb.jhu.edu/software/stringtie/)$0"
},
"Trinity wiki link": {
"prefix": "Trinity",
"body": "[`Trinity`](https://github.com/trinityrnaseq/trinityrnaseq/wiki)$0"
},
// Product links
"Loading dye": {
"prefix": "loading dye",
"body": "[`6x Orange DNA Loading Dye (Thermo Scientific)`](https://www.thermofisher.com/order/catalog/product/R0631)$0"
},
"O'GeneRuler": {
"prefix": "ladder",
"body": "[`O'GeneRuler DNA Ladder Mix, Ready-to-Use 100-10,00bp (Thermo Scientific)`](https://www.fishersci.se/shop/products/fermentas-o-generuler-ready-to-use-dna-ladder-mix/11803983)$0"
},
"Reverse transcriptase": {
"prefix": "reverse transcriptase",
"body": "[`M-MLV Reverse Transcriptase (Promega)`](https://www.promega.com/products/pcr/rt-pcr/m-mlv-reverse-transcriptase/?catNum=M1701)$0"
}
}