From 740d1100a9ce57e346e8f7d3e87f9b2fdd1a2220 Mon Sep 17 00:00:00 2001
From: lakikowolfe <lauren.wolfe@sagebase.org>
Date: Thu, 7 Sep 2023 13:02:23 -0700
Subject: [PATCH] use pre-commit

---
 .pre-commit-config.yaml | 72 +++++++++++++++++++++++++++++++++++++++++
 1 file changed, 72 insertions(+)
 create mode 100644 .pre-commit-config.yaml

diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
new file mode 100644
index 0000000..49359aa
--- /dev/null
+++ b/.pre-commit-config.yaml
@@ -0,0 +1,72 @@
+# See https://pre-commit.com for more information
+# See https://pre-commit.com/hooks.html for more hooks
+repos:
+-   repo: https://github.com/lorenzwalthert/precommit
+    rev: v0.3.2.9019
+    hooks:
+    -   id: style-files
+        args: [--style_pkg=styler, --style_fun=tidyverse_style]
+    # codemeta must be above use-tidy-description when both are used
+    # -   id: codemeta-description-updated
+    -   id: use-tidy-description
+    -   id: lintr
+    -   id: readme-rmd-rendered
+    -   id: parsable-R
+    -   id: no-browser-statement
+    -   id: no-debug-statement
+    -   id: deps-in-desc
+    -   id: spell-check
+        exclude: >
+          (?x)^(
+          .*\.[rR]|
+          .*\.feather|
+          .*\.jpeg|
+          .*\.pdf|
+          .*\.png|
+          .*\.py|
+          .*\.RData|
+          .*\.rds|
+          .*\.Rds|
+          .*\.Rproj|
+          .*\.sh|
+          (.*/|)\.gitignore|
+          (.*/|)\.gitlab-ci\.yml|
+          (.*/|)\.lintr|
+          (.*/|)\.pre-commit-.*|
+          (.*/|)\.Rbuildignore|
+          (.*/|)\.Renviron|
+          (.*/|)\.Rprofile|
+          (.*/|)\.travis\.yml|
+          (.*/|)appveyor\.yml|
+          (.*/|)NAMESPACE|
+          (.*/|)renv/settings\.dcf|
+          (.*/|)renv\.lock|
+          (.*/|)WORDLIST|
+          \.github/workflows/.*|
+          data/.*|
+          )$
+-   repo: https://github.com/pre-commit/pre-commit-hooks
+    rev: v4.4.0
+    hooks: 
+    -   id: check-added-large-files
+        args: ['--maxkb=200']
+    -   id: file-contents-sorter
+        files: '^\.Rbuildignore$'
+    -   id: end-of-file-fixer
+        exclude: '\.Rd'
+    -   id: check-merge-conflict
+-   repo: https://github.com/pre-commit-ci/pre-commit-ci-config
+    rev: v1.5.1
+    hooks:
+    # Only reuiqred when https://pre-commit.ci is used for config validation
+    -   id: check-pre-commit-ci-config
+-   repo: local
+    hooks:
+    -   id: forbid-to-commit
+        name: Don't commit common R artifacts
+        entry: Cannot commit .Rhistory, .RData, .Rds or .rds.
+        language: fail
+        files: '\.(Rhistory|RData|Rds|rds)$'
+        # `exclude: <regex>` to allow committing specific files
+ci:
+    autoupdate_schedule: monthly