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Hi. I am trying to solve a highly-coupled system of nonlinear PDEs. I have attached the code, and I am happy to answer any questions. I have a 2D domain (x,z) and time dependence. My two variables are c (x,z,t), a 2D concentration, and h(x,t), a height. Periodicity is assumed in x and the z domain is transformed onto a fixed domain (such that it is fixed between 0 and 1 and the interface does not move). I keep having issues (current issue is ERROR: LoadError: AssertionError: islinear
Stacktrace). I am not sure why this is happening, in particular because my system of equations will include an additional pde later on.
hb =0.5
s =3.0
Ma =0.01
Ma_s =0.01
eps =0.1
cppp =0.01
vv =0.1
Pe =10000.0
α =0.3using Plots, ModelingToolkit, MethodOfLines, OrdinaryDiffEq, DomainSets
@parameters x z t
@variablesh(..) c(..)
Dt =Differential(t)
Dx =Differential(x)
Dz =Differential(z)
Dxx =Differential(x)^2
Dzz =Differential(z)^2
Dxxx =Differential(x)^3
Dxxxx =Differential(x)^4
Dxz =Differential(x) *Differential(z) # Mixed derivative, d^2(dx dz)brusselator_f(x, z) = (1+ cppp *cos(α * x) *exp(-(z.-hb)^2/(2*vv^2))) * ((z .<=0.5-1/s) *1.0+ (0.5.-1/s .< z .<0.5+1/s) *exp(-1/(1-((z .- (hb -1.0/s))/(.0/s)) ))/(exp(-1/(1-((z .- (hb -1.0/s))/(.0/s)))) +exp(-1/((z .- (hb -1.0/s))/(.0/s)))) + (z .>=0.5+1/s) *0.0)
#plot(z, brusselator_f(0,z,0), label="T(z)", xlabel="z", ylabel="f(z)", title="Plot of initial condition")#∇²(u) = Dxx(u) + Dyy(u)
x_min = y_min = t_min =0.0
x_max = y_max =1.0
t_max =10.0
eqs = [Dt(c(x,z,t)) ~1/Pe*((2*z*(1/h(x,t)*Dx(h(x,t)))^2-z/h(x,t)*Dxx(h(x,t)))*Dz(c(x,z,t))+(z/h(x,t)*Dx(h(x,t)))^2*Dzz(c(x,z,t))-2*z/h(x,t)*Dx(h(x,t))*Dxz(c(x,z,t))+Dxx(c(x,z,t))) +1/(eps^2* Pe * (h(x,t))^2) *Dzz(c(x,z,t)),
Dt(h(x,t)) ~-(h(x,t))^2*Dx(h(x,t))*Dxxx(h(x,t)) -1/3*h(x,t)^3*Dxxxx(h(x,t)) +h(x,t) *Dx(h(x,t)) *Dx(c(x,1.0, t)) +1/2* (h(x,t))^2*Dxx(c(x,1.0, t))]
domains = [x ∈Interval(x_min, x_max),
z ∈Interval(y_min, y_max),
t ∈Interval(t_min, t_max)]
# Periodic BCs
bcs = [h(x,0.0) ~1.0,
h(0.0,t) ~h(1.0,t),
c(x,z,0.0) ~brusselator_f(x, z),
c(0.0,z,t) ~c(1.0,z,t),
Dz(c(x,1.0,t)) ~0.0,
Dz(c(x,0.0,t)) ~0.0]
# Initial condition above models a disturbance@named pdesys =PDESystem(eqs,bcs,domains,[x,z,t],[c(x,z,t),h(x,t)])
N =100
order =2# This may be increased to improve accuracy of some schemes
discretization =MOLFiniteDifference([x=>N, z=>N], t, approx_order=order)
println("Discretization:")
@time prob =discretize(pdesys,discretization)
println("Solving RN:")
@time sol =solve(prob, TRBDF2(), saveat=0.1)
using JLD2
@save"new_solutionn.jld2" sol
The text was updated successfully, but these errors were encountered:
Hi. I am trying to solve a highly-coupled system of nonlinear PDEs. I have attached the code, and I am happy to answer any questions. I have a 2D domain (x,z) and time dependence. My two variables are c (x,z,t), a 2D concentration, and h(x,t), a height. Periodicity is assumed in x and the z domain is transformed onto a fixed domain (such that it is fixed between 0 and 1 and the interface does not move). I keep having issues (current issue is ERROR: LoadError: AssertionError: islinear
Stacktrace). I am not sure why this is happening, in particular because my system of equations will include an additional pde later on.
The text was updated successfully, but these errors were encountered: