PlotStars from FlowSOMSubset

[eghorani]

Dear Sofie,

Thanks for this excellent package!

I would like to PlotStars for an individual sample from the BuildMST object.

I've tried subsetting the BuildMST object using the FlowSOMSubset command:

fSOM2 <- FlowSOMSubset(fSOM,(fSOM$metaData[[1]][1]):(fSOM$metaData[[1]][2]))

And get the following error when attempting to pass fSOM2 to PlotStars...

Error in fsom$map$medianValues[, markers, drop = FALSE] :
no 'dimnames' attribute for array

For the unsubsetted BuildMST object, fsom$map$medianValues has markers for column names. The subsetted object has numbers instead. Maybe this is part of the issue....?

By adding back the correct column names to fsom$map$medianValues, the plot seems to work fine.

Perhaps I'm using your code incorrectly, or is this a bug that needs a small tweak?

Thanks very much