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Sanger Sequencing

[TODO Explain feature]

Enabling Sanger Sequencing

Turn on the engine

Make sure the engine is enabled in your Gemfile

gem "sanger_sequencing", path: "vendor/engines/sanger_sequencing"

Enable the admin-tab for the facility

There is not currently an interface for enabling the admin-side management. In order to enable the "Sanger" top-level tab for a facility, set the sanger_sequencing_enabled field to true/1 on the facility in the facilities table. From the rails console, you can do this by:

Facility.find_by(url_name: "facility-name").update_attributes(sanger_sequencing_enabled: true)

Set up the order form for a service

  • Create a new service from the Products tab, including Pricing
  • Under "Order Forms", add a new Online Order Form
  • Use the URL https://[yourdomain]/sanger_sequencing/submissions/new and click "Add"
  • Click "Activate" to turn it on

Enable Fragment Analysis Well Plate Creation

  • Create a Fragment Analysis Product

  • Add a row "fragment" under sanger_sequencing_product_groups that maps to the new product.

    SangerSequencing::ProductGroup.create(product: product, group: "fragment")

A product can only be part of a single group. If it is not part of a group, it falls back to a "default" group, which is the standard Sanger Sequencing.