Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

loading error for "E-GEOD-38516" #3

Open
JTFouquier opened this issue May 5, 2016 · 3 comments
Open

loading error for "E-GEOD-38516" #3

JTFouquier opened this issue May 5, 2016 · 3 comments

Comments

@JTFouquier
Copy link
Collaborator

#!python

[INFO, L:74] -process experiment E-GEOD-38516-
[INFO, L:155] get experiment info from http://www.ebi.ac.uk/arrayexpress/json/v2/experiments/arrays.txt
[INFO, L:169] get experiment file info from http://www.ebi.ac.uk/arrayexpress/json/v2/files/arrays.txt
[INFO, L:177] get experiment sdrf file from http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-22069/E-GEOD-22069.hyb.sdrf.txt
[INFO, L:177] get experiment sdrf file from http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-22069/E-GEOD-22069.seq.sdrf.txt
[INFO, L:219] get experiment file info from http://www.ebi.ac.uk/arrayexpress/json/v2/files/E-GEOD-38516
[INFO, L:232] get sample file: http://www.ebi.ac.uk/arrayexpress/files/E-GEOD-38516/E-GEOD-38516.processed.1.zip
Traceback (most recent call last):
  File "manage.py", line 10, in <module>
    execute_from_command_line(sys.argv)
  File "/home/cwu/opt/bgpsdatapy/local/lib/python2.7/site-packages/django/core/management/__init__.py", line 399, in execute_from_command_line
    utility.execute()
  File "/home/cwu/opt/bgpsdatapy/local/lib/python2.7/site-packages/django/core/management/__init__.py", line 392, in execute
    self.fetch_command(subcommand).run_from_argv(self.argv)
  File "/home/cwu/opt/bgpsdatapy/local/lib/python2.7/site-packages/django/core/management/base.py", line 242, in run_from_argv
    self.execute(*args, **options.__dict__)
  File "/home/cwu/opt/bgpsdatapy/local/lib/python2.7/site-packages/django/core/management/base.py", line 285, in execute
    output = self.handle(*args, **options)
  File "/home/cwu/prj/biogps/biogps_dataset/dataset/management/commands/start.py", line 84, in handle
    data_matrix = setup_dataset(e)
  File "/home/cwu/prj/biogps/biogps_dataset/dataset/management/commands/start.py", line 268, in setup_dataset
    splited[i] = float(splited[i])
IndexError: list index out of range

@JTFouquier
Copy link
Collaborator Author

AFFX-CreX-5_at 49.33694 A 0.27417
AFFX-CreX-3_at 50.53662 A 0.171387
AFFX-r2-Hs18SrRNA-3_s_at
AFFX-r2-Hs18SrRNA-5_at
AFFX-r2-Hs18SrRNA-M_x_at
AFFX-r2-Hs28SrRNA-3_at
AFFX-r2-Hs28SrRNA-5_at
AFFX-r2-Hs28SrRNA-M_at


Original comment by: jin_xuefeng

@JTFouquier
Copy link
Collaborator Author

last several reporter no data


Original comment by: jin_xuefeng

@JTFouquier
Copy link
Collaborator Author

ignore these reporters


Original comment by: jin_xuefeng

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant