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digitrubber-simple.json
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digitrubber-simple.json
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{
"graphs" : [ {
"id" : "http://purl.obolibrary.org/obo/digitrubber/digitrubber-simple.json",
"meta" : {
"basicPropertyValues" : [ {
"pred" : "http://purl.org/dc/terms/description",
"val" : "DigitRubber Ontology"
}, {
"pred" : "http://purl.org/dc/terms/license",
"val" : "https://creativecommons.org/licenses/unspecified"
}, {
"pred" : "http://purl.org/dc/terms/title",
"val" : "DigitRubber Ontology"
}, {
"pred" : "http://www.geneontology.org/formats/oboInOwl#date",
"val" : "01:06:2023 08:05"
}, {
"pred" : "http://www.w3.org/2002/07/owl#versionInfo",
"val" : "2023-06-01"
} ],
"version" : "http://purl.obolibrary.org/obo/digitrubber/releases/2023-06-01/digitrubber-simple.json"
},
"nodes" : [ {
"id" : "http://purl.obolibrary.org/obo/DIGITRUBBER_0000000",
"lbl" : "root node",
"type" : "CLASS"
}, {
"id" : "http://purl.obolibrary.org/obo/IAO_0000112",
"lbl" : "example of usage",
"type" : "PROPERTY",
"meta" : {
"definition" : {
"val" : "A phrase describing how a term should be used and/or a citation to a work which uses it. May also include other kinds of examples that facilitate immediate understanding, such as widely know prototypes or instances of a class, or cases where a relation is said to hold."
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000111",
"val" : "example of usage"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000114",
"val" : "http://purl.obolibrary.org/obo/IAO_0000122"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000117",
"val" : "PERSON:Daniel Schober"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000119",
"val" : "GROUP:OBI:<http://purl.obolibrary.org/obo/obi>"
}, {
"pred" : "http://www.w3.org/2000/01/rdf-schema#isDefinedBy",
"val" : "http://purl.obolibrary.org/obo/iao.owl"
} ]
}
}, {
"id" : "http://purl.obolibrary.org/obo/IAO_0000114",
"lbl" : "has curation status",
"type" : "PROPERTY",
"meta" : {
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000111",
"val" : "has curation status"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000117",
"val" : "PERSON:Alan Ruttenberg"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000117",
"val" : "PERSON:Bill Bug"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000117",
"val" : "PERSON:Melanie Courtot"
} ]
}
}, {
"id" : "http://purl.obolibrary.org/obo/IAO_0000115",
"lbl" : "textual definition",
"type" : "PROPERTY",
"meta" : {
"definition" : {
"val" : "The official definition, explaining the meaning of a class or property. Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions."
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000111",
"val" : "definition"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000111",
"val" : "definition"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000111",
"val" : "textual definition"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000114",
"val" : "http://purl.obolibrary.org/obo/IAO_0000122"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000116",
"val" : "2012-04-05: \nBarry Smith\n\nThe official OBI definition, explaining the meaning of a class or property: 'Shall be Aristotelian, formalized and normalized. Can be augmented with colloquial definitions' is terrible.\n\nCan you fix to something like:\n\nA statement of necessary and sufficient conditions explaining the meaning of an expression referring to a class or property.\n\nAlan Ruttenberg\n\nYour proposed definition is a reasonable candidate, except that it is very common that necessary and sufficient conditions are not given. Mostly they are necessary, occasionally they are necessary and sufficient or just sufficient. Often they use terms that are not themselves defined and so they effectively can't be evaluated by those criteria. \n\nOn the specifics of the proposed definition:\n\nWe don't have definitions of 'meaning' or 'expression' or 'property'. For 'reference' in the intended sense I think we use the term 'denotation'. For 'expression', I think we you mean symbol, or identifier. For 'meaning' it differs for class and property. For class we want documentation that let's the intended reader determine whether an entity is instance of the class, or not. For property we want documentation that let's the intended reader determine, given a pair of potential relata, whether the assertion that the relation holds is true. The 'intended reader' part suggests that we also specify who, we expect, would be able to understand the definition, and also generalizes over human and computer reader to include textual and logical definition. \n\nPersonally, I am more comfortable weakening definition to documentation, with instructions as to what is desirable. \n\nWe also have the outstanding issue of how to aim different definitions to different audiences. A clinical audience reading chebi wants a different sort of definition documentation/definition from a chemistry trained audience, and similarly there is a need for a definition that is adequate for an ontologist to work with. "
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000117",
"val" : "PERSON:Daniel Schober"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000119",
"val" : "GROUP:OBI:<http://purl.obolibrary.org/obo/obi>"
}, {
"pred" : "http://www.w3.org/2000/01/rdf-schema#isDefinedBy",
"val" : "http://purl.obolibrary.org/obo/iao.owl"
} ]
}
}, {
"id" : "http://purl.obolibrary.org/obo/IAO_0000118",
"lbl" : "alternative term",
"type" : "PROPERTY",
"meta" : {
"definition" : {
"val" : "An alternative name for a class or property which means the same thing as the preferred name (semantically equivalent)"
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000111",
"val" : "alternative term"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000114",
"val" : "http://purl.obolibrary.org/obo/IAO_0000125"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000117",
"val" : "PERSON:Daniel Schober"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000119",
"val" : "GROUP:OBI:<http://purl.obolibrary.org/obo/obi>"
}, {
"pred" : "http://www.w3.org/2000/01/rdf-schema#isDefinedBy",
"val" : "http://purl.obolibrary.org/obo/iao.owl"
} ]
}
}, {
"id" : "http://purl.obolibrary.org/obo/IAO_0000119",
"lbl" : "definition source",
"type" : "PROPERTY",
"meta" : {
"definition" : {
"val" : "Formal citation, e.g. identifier in external database to indicate / attribute source(s) for the definition. Free text indicate / attribute source(s) for the definition. EXAMPLE: Author Name, URI, MeSH Term C04, PUBMED ID, Wiki uri on 31.01.2007"
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000111",
"val" : "definition source"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000114",
"val" : "http://purl.obolibrary.org/obo/IAO_0000122"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000117",
"val" : "PERSON:Daniel Schober"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000119",
"val" : "Discussion on obo-discuss mailing-list, see http://bit.ly/hgm99w"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000119",
"val" : "GROUP:OBI:<http://purl.obolibrary.org/obo/obi>"
}, {
"pred" : "http://www.w3.org/2000/01/rdf-schema#isDefinedBy",
"val" : "http://purl.obolibrary.org/obo/iao.owl"
} ]
}
}, {
"id" : "http://purl.obolibrary.org/obo/IAO_0000412",
"lbl" : "imported from",
"type" : "PROPERTY",
"meta" : {
"definition" : {
"val" : "For external terms/classes, the ontology from which the term was imported"
},
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000111",
"val" : "imported from"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000114",
"val" : "http://purl.obolibrary.org/obo/IAO_0000125"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000117",
"val" : "PERSON:Alan Ruttenberg"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000117",
"val" : "PERSON:Melanie Courtot"
}, {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000119",
"val" : "GROUP:OBI:<http://purl.obolibrary.org/obo/obi>"
}, {
"pred" : "http://www.w3.org/2000/01/rdf-schema#isDefinedBy",
"val" : "http://purl.obolibrary.org/obo/iao.owl"
} ]
}
}, {
"id" : "http://purl.org/dc/elements/1.1/contributor",
"lbl" : "Contributor",
"type" : "PROPERTY",
"meta" : {
"comments" : [ "An entity responsible for making contributions to the\n content of the resource." ],
"basicPropertyValues" : [ {
"pred" : "http://purl.org/dc/elements/1.1/description",
"val" : "Examples of a Contributor include a person, an \n organisation, or a service. Typically, the name of a \n Contributor should be used to indicate the entity."
}, {
"pred" : "http://www.w3.org/2000/01/rdf-schema#isDefinedBy",
"val" : "http://purl.org/dc/elements/1.1/"
} ]
}
}, {
"id" : "http://purl.org/dc/elements/1.1/language",
"lbl" : "Language",
"type" : "PROPERTY",
"meta" : {
"comments" : [ "A language of the intellectual content of the resource." ],
"basicPropertyValues" : [ {
"pred" : "http://purl.org/dc/elements/1.1/description",
"val" : "Recommended best practice is to use RFC 3066 [RFC3066],\n which, in conjunction with ISO 639 [ISO639], defines two-\n and three-letter primary language tags with optional\n subtags. Examples include \"en\" or \"eng\" for English,\n \"akk\" for Akkadian, and \"en-GB\" for English used in the\n United Kingdom."
}, {
"pred" : "http://www.w3.org/2000/01/rdf-schema#isDefinedBy",
"val" : "http://purl.org/dc/elements/1.1/"
} ]
}
}, {
"id" : "http://purl.org/dc/terms/description",
"lbl" : "description",
"type" : "PROPERTY"
}, {
"id" : "http://purl.org/dc/terms/license",
"lbl" : "license",
"type" : "PROPERTY",
"meta" : {
"basicPropertyValues" : [ {
"pred" : "http://purl.obolibrary.org/obo/IAO_0000117",
"val" : "Mark Miller"
}, {
"pred" : "http://purl.org/dc/elements/1.1/date",
"val" : "2018-05-11T13:47:29Z"
} ]
}
}, {
"id" : "http://purl.org/dc/terms/title",
"lbl" : "title",
"type" : "PROPERTY"
}, {
"id" : "http://www.geneontology.org/formats/oboInOwl#hasExactSynonym",
"lbl" : "has_exact_synonym",
"type" : "PROPERTY"
} ]
} ]
}