'make' fails when I run it on my fedora 32 machine

[shokohirosue]

Hi, thank you for developing and maintaining a great package.

I previously had no problem installing samstat, but somehow make gives me error when I run it for samstat-1.5.1 on my new machine.
Do you have any ideas why this could be?

Here's the output:

Making all in lib
make[1]: Entering directory ‘/mnt/data/src/samstat-1.5.1/lib’
make[1]: Nothing to be done for ‘all’.
make[1]: Leaving directory ‘/mnt/data/src/samstat-1.5.1/lib’
Making all in src
make[1]: Entering directory ‘/mnt/data/src/samstat-1.5.1/src’
make all-am
make[2]: Entering directory ‘/mnt/data/src/samstat-1.5.1/src’
gcc -O2 -funroll-loops  -Wall -std=gnu99  -o samstat interface.o nuc_code.o misc.o main.o io.o hmm.o viz.o -lm -lpthread /mnt/data/src/samstat-1.5.1/lib/libks.a 
/usr/bin/ld: misc.o:(.bss+0x0): multiple definition of `rev_nuc_code’; nuc_code.o:(.bss+0x0): first defined here
/usr/bin/ld: misc.o:(.bss+0x20): multiple definition of `nuc_code’; nuc_code.o:(.bss+0x20): first defined here
/usr/bin/ld: main.o:(.bss+0x20): multiple definition of `nuc_code’; nuc_code.o:(.bss+0x20): first defined here
/usr/bin/ld: main.o:(.bss+0x0): multiple definition of `rev_nuc_code’; nuc_code.o:(.bss+0x0): first defined here
/usr/bin/ld: io.o:(.bss+0x20): multiple definition of `nuc_code’; nuc_code.o:(.bss+0x20): first defined here
/usr/bin/ld: io.o:(.bss+0x0): multiple definition of `rev_nuc_code’; nuc_code.o:(.bss+0x0): first defined here
collect2: error: ld returned 1 exit status
make[2]: *** [Makefile:587: samstat] Error 1
make[2]: Leaving directory ‘/mnt/data/src/samstat-1.5.1/src’
make[1]: *** [Makefile:486: all] Error 2
make[1]: Leaving directory ‘/mnt/data/src/samstat-1.5.1/src’
make: *** [Makefile:334: all-recursive] Error 1

Thank you very much for your help.

[TimoLassmann]

Hi, this will take some time to investigate and fix. In the meantime I suggest using fastQC as an alternative.

[shokohirosue]

Hi, thank you for getting back to me.

I found this while installing bwa and apparently there are some changes in the default setting for GCC10. (I had to install their updated version.) I am not sure if this is helpful but anyway (sorry if it isn't!)
lh3/bwa#267

Thank you very much for your help.