| layout | title |
|---|---|
page |
Course Schedule |
Schedule is subject to change (but not the exam dates)
| Day & Time | Date | Topic |
|---|---|---|
| Tue 1:10 - 5:00 | 31-Mar | Intro Bioinformatics |
| Thur 1:10 - 5:00 | 2-Apr | 1. Git ; 2. Seq Alignment |
| Fri 1:10 - 2:00 | 3-Apr | Discussion: Seq Alignment |
| Tue 1:10 - 5:00 | 7-Apr | Seq Alignment continued |
| Thur 1:10 - 5:00 | 9-Apr | BLAST |
| Fri 1:10 - 2:00 | 10-Apr | BLAST |
| Tue 1:10 - 5:00 | 14-Apr | Discussion: BLAST & Seq Alignment ; R: Intro |
| Thur 1:10 - 5:00 | 16-Apr | R: ggplot |
| Fri 1:10 - 2:00 | 17-Apr | More R |
| Tue 1:10 - 5:00 | 21-Apr | R and SNP analysis |
| Thur 1:10 - 5:00 | 23-Apr | R and GWAS |
| Fri 1:10 - 2:00 | 24-Apr | Discussion: SNPs/ GWAS |
| Tue 1:10 - 5:00 | 28-Apr | Shiny |
| Thur 1:10 - 5:00 | 30-Apr | Shiny, cont. Midterm Q and A review session |
| Fri 1:10 - 2:00 | 1-May | Midterm Handed out |
| Tue 1:10 - 5:00 | 5-May | Illumina Sequence Data: QC and mapping |
| Thur 1:10 - 5:00 | 7-May | Illumina: SNPs and IGV Midterm Due @ 1:10 |
| Fri 1:10 - 2:00 | 8-May | Discussion: Illumina Sequencing, etc |
| Tue 1:10 - 5:00 | 12-May | Illumina: RNAseq analysis |
| Thur 1:10 - 5:00 | 14-May | Expression clustering; Motif discovery |
| Fri 1:10 - 2:00 | 15-May | Discussion: RNAseq, etc |
| Tue 1:10 - 5:00 | 19-May | Genetic Networks |
| Thur 1:10 - 5:00 | 21-May | Genetic Networks |
| Fri 1:10 - 2:00 | 22-May | Discussion: Genetic Networks |
| Tue 1:10 - 5:00 | 26-May | Metagenomics |
| Thur 1:10 - 5:00 | 28-May | Metagenomics |
| Fri 1:10 - 2:00 | 29-May | Discussion: Metagenomics |
| Tue 1:10 - 5:00 | 2-Jun | Automating tasks in R Final Exam Handed out |
| Thur 1:10 - 5:00 | 4-Jun | Open office hours for final exam questions |
| Mon 9:00 AM | 8-Jun | Final Exam Due 9AM |