diff --git a/docs/container-workshop/index.html b/docs/container-workshop/index.html index 75cbe84..66c5093 100644 --- a/docs/container-workshop/index.html +++ b/docs/container-workshop/index.html @@ -480,56 +480,7 @@

Overview of what we have...

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- Zenodo

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- GitHub

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- Mention GitHub Pro for educators

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- Spin up the CodeSpaces Demo to test out the tooling

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- Mention how to make Podman container files Docker friendly

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- Go through process of creating account

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- Create zip

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- Uploading/managing

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Build log

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"docker build"

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"docker run"

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packages are pulled at build time, so versions are latest if not specified

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[Teaching] While project builds... (15 minutes)

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- explanation of containerization + remote access

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- local -> remote access -> container -> project (diagram)

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- R/Python binaries -> installation via Jupyter image (/opt/conda/)

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- Show access to terminal on VS Code (inside container)

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- Rmd/Qmd/ipynb in VS Code

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- Show off web interface like VS Code Notebooks, JupyterLab, RStudio

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Installing Packages (15 minutes)

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- Installing required packages for the task

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- System packages (tree, tmux)

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- include packages as comments

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Reproducibility (20 minutes)

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- Verifying required package versions

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- For R we talk about using `remotes` for versioning a package

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- Editing Dockerfile to include them

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- Rebuilding

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Common issues with local research computing

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Complete task

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- Run some examples

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- Generate a PDF?

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Instance Deployment

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