Suggestion to actually change the TR in the fsf file

[MoatazAssem]

HCPpipelines/TaskfMRIAnalysis/scripts/TaskfMRILevel1.sh

Line 279 in 0e220bc

log_Msg "MAIN: IMAGE_INFO: TR_vol: ${TR_vol}"

Hi,

I was recently running an analysis for several task runs, each with a different TR. Because this line prints out the TR in the log message, I assumed it also automatically changes it in the fsf file (as is done in other steps like smoothing). However, clearly it doesn't change it. I suggest adding a line to ensure the actual TR extracted from the image file is the one used in the .fsf file.

Something like this should work:
sed -i "s/fmri(tr) [0-9.]*/fmri(tr) ${TR_vol}/" ${FEATDir}/design.fsf

Thanks

Moataz

[glasserm]

Hi Moataz,

I thought we are already doing that, but clearly we are not. I would be happy to accept a tested pull request that does this.

Thanks,

Matt.