You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
I was recently running an analysis for several task runs, each with a different TR. Because this line prints out the TR in the log message, I assumed it also automatically changes it in the fsf file (as is done in other steps like smoothing). However, clearly it doesn't change it. I suggest adding a line to ensure the actual TR extracted from the image file is the one used in the .fsf file.
Something like this should work:
sed -i "s/fmri(tr) [0-9.]*/fmri(tr) ${TR_vol}/" ${FEATDir}/design.fsf
Thanks
Moataz
The text was updated successfully, but these errors were encountered:
HCPpipelines/TaskfMRIAnalysis/scripts/TaskfMRILevel1.sh
Line 279 in 0e220bc
Hi,
I was recently running an analysis for several task runs, each with a different TR. Because this line prints out the TR in the log message, I assumed it also automatically changes it in the fsf file (as is done in other steps like smoothing). However, clearly it doesn't change it. I suggest adding a line to ensure the actual TR extracted from the image file is the one used in the .fsf file.
Something like this should work:
sed -i "s/fmri(tr) [0-9.]*/fmri(tr) ${TR_vol}/" ${FEATDir}/design.fsf
Thanks
Moataz
The text was updated successfully, but these errors were encountered: