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Revert 6046e6648b9adce7f5274ed2f5ba6840524c0d26...4bddb5f058454f02bc78af7a21f50e1a04a3a5e9 on Installation and Usage Instructions
Updated Installation and Usage Instructions (markdown)
don't specifically recommend 6.0.5, which inappropriately copies nifti header extensions from reference space files
Highlighted lack of support for FS 7.X
Spelled out temporal ICA
Updating "I still have questions"
Updated Subjlist, Queue instructions, instructions for modifying fMRINames and ConcatNames in IcaFixProcessingBatch.sh
Detail on as distributed settings of ICA+FIX
Clarification that setting MCR correctly is only necessary if compiled MATLAB will be used
Changed instructions for setting HCPPIPEDIR, added MATLAB_COMPILER_RUNTIME section
Clarification of running jobs locally via fsl_sub, updated Functional preprocessing and Task analysis steps to include all runs as they are in the example scripts, description of MSMAll
Added QUEUE variable, more direct reference to job error file, moved diffusion to end, inserted FIX and MSMAll (new) after functional
Fixed wording and typos
Added sections for setting the directory for MSMBINDIR and FSL_FIXDIR + fixed formatting of PreFreeSurferPipeline.sh.e<process-id>
Updated Installation item 5 to have correct contents from v4.3.0, added link to Ref Man for instructions for signing DUT
Fixing typos, updated name of pipelines directory from "Pipelines-4.3.0" to "HCPpipelines-4.3.0" as it is named upon download.
remove unused release notes section
Updated Home (markdown)
Update gradunwarp version number
Updated FAQ (markdown)