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Visualize scATAC-seq profiles using PCA and UMAP. Construct a support vector classifier (SVC) to predict cell type given ATAC-seq expression profile.

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Name		Name	Last commit message	Last commit date
Latest commit History 16 Commits
images		images
test		test
README.md		README.md
atac_seq_analysis.py		atac_seq_analysis.py
environment.yml		environment.yml
unittest_atac_seq_analysis.py		unittest_atac_seq_analysis.py

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ATAC-seq analysis

UMAP cluster image

SVC predictions

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Visualize scATAC-seq profiles using PCA and UMAP. Construct a support vector classifier (SVC) to predict cell type given ATAC-seq expression profile.

machine-learning dimensionality-reduction atac-seq principal-component-analysis umap support-vector-classifier

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