Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Bakta web version ignores translation table change #19

Open
oschwengers opened this issue Jul 18, 2024 · 1 comment
Open

Bakta web version ignores translation table change #19

oschwengers opened this issue Jul 18, 2024 · 1 comment
Labels
bug Something isn't working

Comments

@oschwengers
Copy link
Member

Originally reported by @AggressiveHayBale in oschwengers/bakta#305

Description
Accessing the current version of web version of Bakta (Software: 1.9.1| DB: 5.0.0) and selecting Translational table: 4: The Mold... results in the Bakta execution on the default table 11, ignoring the selection.

Step to replicate
Annotate the genome while changing the translational table 11 to 4.

Output
The output json reports:

{
    "genome": {
        "genus": null,
        "species": null,
        "strain": null,
        "complete": true,
        "gram": "?",
        "translation_table": 11
    }

I assume somewhere in the web version code either referring to this parameter is overwritten or the selection in the web GUI goes nowhere (I couldn't find the code related to the web code in the repo).

@oschwengers oschwengers added the bug Something isn't working label Jul 18, 2024
@St4NNi
Copy link
Member

St4NNi commented Aug 26, 2024

This will be fixed by the new backend branch

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
bug Something isn't working
Projects
None yet
Development

No branches or pull requests

2 participants