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[BUG] import the review.assembly does not work #1027

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YaoZhou89 opened this issue Jan 16, 2024 · 1 comment
Open

[BUG] import the review.assembly does not work #1027

YaoZhou89 opened this issue Jan 16, 2024 · 1 comment
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@YaoZhou89
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Describe the bug
Our genome size is ~4Gb and the scale factor is 2. When I load the .hic file, the default scale factor is set to 3. Next, I imported the .assemlby file and set the scale factor to 2. Then, I continued to import the .review.assembly, the scale factor was changed to 3 again and the heatmap was not changed as expected. Although I set the scale factor to 2 again, heatmap is still the original one.

To Reproduce
Steps to reproduce the behavior:

  1. Go to 'file -> open ' and load the local .hic file
  2. Go to 'Assembly -> Import Map Assembly' and import the original .assembly file.
  3. Go to 'Assembly -> Import Modified Assembly' and import the manually reviewed assembly file (.review.assembly)
  4. Scroll down to 'Set Scale' and set the to 2
  5. See error (the heatmap keep the same)

Expected behavior
The heatmap should change according to the .review.assembly file.

Screenshots

Desktop (please complete the following information):

  • OS: macOS Montery
  • Version 2.17.00

Additional context
Add any other context about the problem here.

@YaoZhou89 YaoZhou89 added the bug label Jan 16, 2024
@paka14
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paka14 commented Mar 8, 2024

Yes, I also met the same situation. Is it a bug? How can I solve it?

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