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index error: double free or corruption (!prev) #2158

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WT215 opened this issue Jun 20, 2024 · 0 comments · May be fixed by #2163
Open

index error: double free or corruption (!prev) #2158

WT215 opened this issue Jun 20, 2024 · 0 comments · May be fixed by #2163

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@WT215
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WT215 commented Jun 20, 2024

Hello,

I use STAR for index a custom genome, and got following error:

STAR version: 2.7.10a   compiled: 2022-07-10T18:35:36+01:00 :/home/clustor2/ma/w/wt215/BTC_project/STAR-2.7.10a/source
Jun 20 13:45:03 ..... started STAR run
Jun 20 13:45:03 ... starting to generate Genome files
Jun 20 13:45:03 ..... processing annotations GTF
Jun 20 13:45:03 ... starting to sort Suffix Array. This may take a long time...
Jun 20 13:45:03 ... sorting Suffix Array chunks and saving them to disk...
Jun 20 13:45:03 ... loading chunks from disk, packing SA...
Jun 20 13:45:03 ... finished generating suffix array
Jun 20 13:45:03 ... generating Suffix Array index
Jun 20 13:45:03 ... completed Suffix Array index
Jun 20 13:45:03 ... writing Genome to disk ...
Jun 20 13:45:03 ... writing Suffix Array to disk ...
Jun 20 13:45:03 ... writing SAindex to disk
double free or corruption (!prev)
Aborted (core dumped)

I tried to attached the .fa and .gtf files as below (remove .jpeg). Hope they can be downloaded.
I
tdTomato_newRef fa
tdTomato_newRef gtf

@eternal-flame-AD eternal-flame-AD linked a pull request Jun 28, 2024 that will close this issue
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