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$ ./opal_aligner -a NW -x 2 /tmp/query.faa /tmp/targets.faa Using NW alignment mode.Reading query fasta file...Read query sequence, 311 residues.Reading database fasta file...Read 131817 database sequences, 41551837 residues total.Whole database read: 131817 database sequences, 41551837 residues in total.Comparing query to database...fish: Job 1, './opal_aligner -a NW -x 2 /tmp/…' terminated by signal SIGSEGV (Address boundary error)
It doesn't happen with the Smith-Waterman algorithm (-a SW -x 2), and doesn't happen in partial alignment mode (-a NW -x 1) so this looks like a bug specific to Needleman-Wunsch and full alignment (-a NW -x 2).
During a larger alignment job, my kernel dies. I attach the dataset I used in ZIP file:
pickles.zip
Reproducible snippet:
pyopal version: 0.2.0
EDIT: tried
overflow="buckets"
, no luck.The text was updated successfully, but these errors were encountered: