test.json

{
    "cnts":{
        "comment": "the cnts listed in this section ARE used in the monte carlo simulation",
        "directory": "~/research/exciton_energy/",
        "1": {
            "keep old results": false,
            "chirality": [4,2],
            "length": [10,"cnt unit cells"]
        }
    },

    "exciton transfer":{
        "directory": "~/research/exciton_transfer",
        "1":{
            "keep old results": false,
            "skip": true,
            "cnt 1":"42",
            "cnt 2":"42",
            "angle": [0,90,100,"degrees"],
            "zshift": [1.9,"nm"],
            "axis shift 1": [0,"nm"],
            "axis shift 2": [0,"nm"],
            "temperature": [300,"Kelvin"],
            "broadening factor": [4,"meV"]
        },
        "2":{
            "keep old results": false,
            "skip": false,
            "cnt 1":"42",
            "cnt 2":"65",
            "angle": [0,90,10,"degrees"],
            "zshift": [1.9,"nm"],
            "axis shift 1": [0,"nm"],
            "axis shift 2": [0,"nm"],
            "temperature": [300,"Kelvin"],
            "broadening factor": [4,"meV"]
        }
    },

    "exciton monte carlo":{
        "mesh input directory": "~/research/mesh/random_mesh",

        "output directory": "~/research/monte_carlo_fiber_test",
        "keep old results":true,

        "rate type":"davoody",
        "zshift [m]": [1.5e-9, 10e-9, 11],
        "axis shift 1 [m]": [-10e-9, 10e-9, 11],
        "axis shift 2 [m]": [-10e-9, 10e-9, 11],
        "theta [degrees]": [0, 180, 21],
        "temperature [kelvin]": 300, 

        "max hopping radius [m]": 20e-9,

        "number of segments":10,
        "trim limits":{
          "xlim":[-1e-6, 1e-6],
          "ylim":[0, 1e-7],
          "zlim":[-1e-6, 1e-6]
        },

        "exciton velocity [m/s]":2e5, 
        "monte carlo time step":1e-15,

        "number of sections for injection region": 5,
        "maximum time for kubo simulation [seconds]": 1e-9,
        "number of particles for kubo simulation": 500
    }
}