From 7609b56706cc8da4c5336298115c517b85e9f555 Mon Sep 17 00:00:00 2001 From: AliceJoubert Date: Wed, 29 May 2024 15:04:41 +0200 Subject: [PATCH] Fix reorganize function --- .../adni_to_bids/adni_modalities/adni_fmap.py | 17 +++++++++-------- 1 file changed, 9 insertions(+), 8 deletions(-) diff --git a/clinica/iotools/converters/adni_to_bids/adni_modalities/adni_fmap.py b/clinica/iotools/converters/adni_to_bids/adni_modalities/adni_fmap.py index ab2bb3425..b51e2d2b8 100644 --- a/clinica/iotools/converters/adni_to_bids/adni_modalities/adni_fmap.py +++ b/clinica/iotools/converters/adni_to_bids/adni_modalities/adni_fmap.py @@ -3,7 +3,7 @@ import os import re import shutil -from enum import StrEnum, auto +from enum import Enum from os import PathLike from pathlib import Path from typing import Callable, Iterable, List, Optional @@ -253,12 +253,12 @@ def fmap_image( return image_dict -class BIDSFMAPCase(StrEnum): - EMPTY_FOLDER = auto() - ONE_PHASE_TWO_MAGNITUDES = auto() - TWO_PHASES_TWO_MAGNITUDES = auto() - DIRECT_FIELDMAPS = auto() - NOT_SUPPORTED = auto() +class BIDSFMAPCase(str, Enum): + EMPTY_FOLDER = "empty_folder" + ONE_PHASE_TWO_MAGNITUDES = "one_phase_two_magnitudes" + TWO_PHASES_TWO_MAGNITUDES = "two_phases_two_magnitudes" + DIRECT_FIELDMAPS = "direct_fieldmaps" + NOT_SUPPORTED = "not_supported" def phase_magnitude_renamer(old_extension: str, case: BIDSFMAPCase) -> str: @@ -436,7 +436,8 @@ def reorganize_fmaps(bids_path: Path): if folder.name.startswith("ses-") and folder.is_dir() ): fmap_path = bids_path / subject / session / "fmap" - fmap_case_handler_factory(infer_case_fmap(fmap_path))(fmap_path) + if fmap_path.exists(): + fmap_case_handler_factory(infer_case_fmap(fmap_path))(fmap_path) def bids_guess(bids_path: Path):