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CHANGELOG.md

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VCFlat: Changelog

[0.3.0] Fast fixes

  • HeaderExtraction refactored to understandable code
  • pprint functions
  • VAF removed since it is wrong to do it this way
  • sample renaming fixed and added back in
  • tuple values that were changed to _REF _ALT but shouldnt have been fixed
  • work on better parsing of INFO has been added

[0.2.1] Fast fixes

  • --anno option bug fixes
  • --long_anno added so that annotation that is long can be ignored (default set at 20)
  • basic regexes implemented for the --keys option

[0.2.0] Some major Things that broke quicky

  • --anno option added to deal with multi annotated vcf files were
  • minor fixes to the existing code

[0.1.1] First real fixes

  • Now extracts all annotations and not just the last one
  • Generates a new row if there are more than one annotations per variant

[0.1.0] Initial implementation

  • A simple parser that takes a vcf file and spits out a tab delimited files
  • Very limited functionality