btl_bloomfilter-1.2.1/work/btl_bloomfilter-1.2.1/test-driver: line 112: 26977 Aborted (core dumped)

[mmokrejs]

>>> Test phase: sci-biology/btl_bloomfilter-1.2.1
Making check in Tests/AdHoc
make[1]: Entering directory '/var/tmp/portage/portage/sci-biology/btl_bloomfilter-1.2.1/work/btl_bloomfilter-1.2.1/Tests/AdHoc'
make  BloomFilterTests ParallelFilter
make[2]: Entering directory '/var/tmp/portage/portage/sci-biology/btl_bloomfilter-1.2.1/work/btl_bloomfilter-1.2.1/Tests/AdHoc'
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../..  -I../..  -Wall -Wextra -Werror -fopenmp -std=c++11 -O2 -pipe -march=native -ftree-vectorize -c -o BloomFilterTests-BloomFilterTests.o `test -f 'BloomFilterTests.cpp' || echo './'`BloomFilterTests.cpp
x86_64-pc-linux-gnu-g++ -Wall -Wextra -Werror -fopenmp -std=c++11 -O2 -pipe -march=native -ftree-vectorize  -Wl,-O1 -Wl,--as-needed -o BloomFilterTests BloomFilterTests-BloomFilterTests.o  
x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I../..  -I../..  -Wall -Wextra -Werror -fopenmp -std=c++11 -O2 -pipe -march=native -ftree-vectorize -c -o ParallelFilter-ParallelFilter.o `test -f 'ParallelFilter.cpp' || echo './'`ParallelFilter.cpp
x86_64-pc-linux-gnu-g++ -Wall -Wextra -Werror -fopenmp -std=c++11 -O2 -pipe -march=native -ftree-vectorize  -Wl,-O1 -Wl,--as-needed -o ParallelFilter ParallelFilter-ParallelFilter.o  
make[2]: Leaving directory '/var/tmp/portage/portage/sci-biology/btl_bloomfilter-1.2.1/work/btl_bloomfilter-1.2.1/Tests/AdHoc'
make  check-TESTS
make[2]: Entering directory '/var/tmp/portage/portage/sci-biology/btl_bloomfilter-1.2.1/work/btl_bloomfilter-1.2.1/Tests/AdHoc'
make[3]: Entering directory '/var/tmp/portage/portage/sci-biology/btl_bloomfilter-1.2.1/work/btl_bloomfilter-1.2.1/Tests/AdHoc'
../../test-driver: line 112: 26977 Aborted                 (core dumped) "$@" >> "$log_file" 2>&1
FAIL: BloomFilterTests
PASS: ParallelFilter
============================================================================
Testsuite summary for BLOOMFILTER 1.2.1
============================================================================
# TOTAL: 2
# PASS:  1
# SKIP:  0
# XFAIL: 0
# FAIL:  1
# XPASS: 0
# ERROR: 0
============================================================================
See Tests/AdHoc/test-suite.log
Please report to [email protected]
============================================================================
make[3]: *** [Makefile:667: test-suite.log] Error 1
make[3]: Leaving directory '/var/tmp/portage/portage/sci-biology/btl_bloomfilter-1.2.1/work/btl_bloomfilter-1.2.1/Tests/AdHoc'
make[2]: *** [Makefile:775: check-TESTS] Error 2
make[2]: Leaving directory '/var/tmp/portage/portage/sci-biology/btl_bloomfilter-1.2.1/work/btl_bloomfilter-1.2.1/Tests/AdHoc'
make[1]: *** [Makefile:855: check-am] Error 2
make[1]: Leaving directory '/var/tmp/portage/portage/sci-biology/btl_bloomfilter-1.2.1/work/btl_bloomfilter-1.2.1/Tests/AdHoc'
make: *** [Makefile:469: check-recursive] Error 1

(gdb) where
#0  0x00007fae17fd4291 in raise () from /lib64/libc.so.6
#1  0x00007fae17fbe536 in abort () from /lib64/libc.so.6
#2  0x00007fae17fbe41f in __assert_fail_base.cold () from /lib64/libc.so.6
#3  0x00007fae17fcccf2 in __assert_fail () from /lib64/libc.so.6
#4  0x000055aaa4cbe543 in main () at BloomFilterTests.cpp:133
(gdb) bt full
#0  0x00007fae17fd4291 in raise () from /lib64/libc.so.6
No symbol table info available.
#1  0x00007fae17fbe536 in abort () from /lib64/libc.so.6
No symbol table info available.
#2  0x00007fae17fbe41f in __assert_fail_base.cold () from /lib64/libc.so.6
No symbol table info available.
#3  0x00007fae17fcccf2 in __assert_fail () from /lib64/libc.so.6
No symbol table info available.
#4  0x000055aaa4cbe543 in main () at BloomFilterTests.cpp:133
        memUsage = 6236
        filterSize = 1000000
        numHashes = 3
        k = 4
        seq = 0x55aaa4ce7b71 "ACGTAC"
        filter = {m_filter = 0x55aaa689f120 "", m_size = 1000000, m_sizeInBytes = 125000, m_hashNum = 3, m_kmerSize = 4, m_dFPR = 0, m_nEntry = 0, m_tEntry = 0}
        insertIt = {m_seq = {static npos = 18446744073709551615, _M_dataplus = {<std::allocator<char>> = {<__gnu_cxx::new_allocator<char>> = {<No data fields>}, <No data fields>}, 
              _M_p = 0x7ffd999efc50 "ACGTAC"}, _M_string_length = 6, {_M_local_buf = "ACGTAC\000\000\000\000\000\000\000\000\000", _M_allocated_capacity = 73947865891649}}, m_h = 3, 
          m_k = 4, m_hVec = 0x55aaa689d090, m_pos = 18446744073709551615, m_fhVal = 17023861349393640413, m_rhVal = 17023861349393640413}
        queryIt = {m_seq = {static npos = 18446744073709551615, _M_dataplus = {<std::allocator<char>> = {<__gnu_cxx::new_allocator<char>> = {<No data fields>}, <No data fields>}, 
              _M_p = 0x7ffd999efca0 "ACGTAC"}, _M_string_length = 6, {_M_local_buf = "ACGTAC\000\000\000\000\000\000\000\000\000", _M_allocated_capacity = 73947865891649}}, m_h = 3, 
          m_k = 4, m_hVec = 0x55aaa689d0b0, m_pos = 18446744073709551615, m_fhVal = 17023861349393640413, m_rhVal = 17023861349393640413}
        __PRETTY_FUNCTION__ = "int main()"
        filename = {static npos = 18446744073709551615, _M_dataplus = {<std::allocator<char>> = {<__gnu_cxx::new_allocator<char>> = {<No data fields>}, <No data fields>}, 
            _M_p = 0x55aaa689e0e0 "/tmp/bloomFilter.bf"}, _M_string_length = 19, {_M_local_buf = "\023", '\000' <repeats 14 times>, _M_allocated_capacity = 19}}
        ifile = {<std::basic_istream<char, std::char_traits<char> >> = {<std::basic_ios<char, std::char_traits<char> >> = {<std::ios_base> = {
                _vptr.ios_base = 0x7fae183a6e88 <vtable for std::basic_ifstream<char, std::char_traits<char> >+64>, static boolalpha = std::_S_boolalpha, static dec = std::_S_dec, 
                static fixed = std::_S_fixed, static hex = std::_S_hex, static internal = std::_S_internal, static left = std::_S_left, static oct = std::_S_oct, 
                static right = std::_S_right, static scientific = std::_S_scientific, static showbase = std::_S_showbase, static showpoint = std::_S_showpoint, 
                static showpos = std::_S_showpos, static skipws = std::_S_skipws, static unitbuf = std::_S_unitbuf, static uppercase = std::_S_uppercase, 
                static adjustfield = std::_S_adjustfield, static basefield = std::_S_basefield, static floatfield = std::_S_floatfield, static badbit = std::_S_badbit, 
                static eofbit = std::_S_eofbit, static failbit = std::_S_failbit, static goodbit = std::_S_goodbit, static app = std::_S_app, static ate = std::_S_ate, 
                static binary = std::_S_bin, static in = std::_S_in, static out = std::_S_out, static trunc = std::_S_trunc, static beg = std::_S_beg, static cur = std::_S_cur, 
                static end = std::_S_end, _M_precision = 6, _M_width = 0, _M_flags = 4098, _M_exception = std::_S_goodbit, _M_streambuf_state = std::_S_goodbit, _M_callbacks = 0x0, 
                _M_word_zero = {_M_pword = 0x0, _M_iword = 0}, _M_local_word = {{_M_pword = 0x0, _M_iword = 0}, {_M_pword = 0x0, _M_iword = 0}, {_M_pword = 0x0, _M_iword = 0}, {
                    _M_pword = 0x0, _M_iword = 0}, {_M_pword = 0x0, _M_iword = 0}, {_M_pword = 0x0, _M_iword = 0}, {_M_pword = 0x0, _M_iword = 0}, {_M_pword = 0x0, _M_iword = 0}}, 
                _M_word_size = 8, _M_word = 0x7ffd999efec0, _M_ios_locale = {static none = 0, static ctype = 1, static numeric = 2, static collate = 4, static time = 8, 
                  static monetary = 16, static messages = 32, static all = 63, _M_impl = 0x7fae183afd20 <(anonymous namespace)::c_locale_impl>}}, _M_tie = 0x0, _M_fill = 0 '\000', 
              _M_fill_init = false, _M_streambuf = 0x7ffd999efd90, _M_ctype = 0x7fae183af740 <(anonymous namespace)::ctype_c>, _M_num_put = 
    0x7fae183af6d0 <(anonymous namespace)::num_put_c>, _M_num_get = 0x7fae183af6e0 <(anonymous namespace)::num_get_c>}, 
            _vptr.basic_istream = 0x7fae183a6e60 <vtable for std::basic_ifstream<char, std::char_traits<char> >+24>, _M_gcount = 0}, 
          _M_filebuf = {<std::basic_streambuf<char, std::char_traits<char> >> = {_vptr.basic_streambuf = 0x7fae183a6d68 <vtable for std::basic_filebuf<char, std::char_traits<char> >+16>, 
              _M_in_beg = 0x0, _M_in_cur = 0x0, _M_in_end = 0x0, _M_out_beg = 0x0, _M_out_cur = 0x0, _M_out_end = 0x0, _M_buf_locale = {static none = 0, static ctype = 1, 
                static numeric = 2, static collate = 4, static time = 8, static monetary = 16, static messages = 32, static all = 63, 
                _M_impl = 0x7fae183afd20 <(anonymous namespace)::c_locale_impl>}}, _M_lock = {__data = {__lock = 0, __count = 0, __owner = 0, __nusers = 0, __kind = 0, __spins = 0, 
                __elision = 0, __list = {__prev = 0x0, __next = 0x0}}, __size = '\000' <repeats 39 times>, __align = 0}, _M_file = {_M_cfile = 0x0, _M_cfile_created = true}, _M_mode = 0, 
            _M_state_beg = {__count = 0, __value = {__wch = 0, __wchb = "\000\000\000"}}, _M_state_cur = {__count = 0, __value = {__wch = 0, __wchb = "\000\000\000"}}, _M_state_last = {
              __count = 0, __value = {__wch = 0, __wchb = "\000\000\000"}}, _M_buf = 0x0, _M_buf_size = 8192, _M_buf_allocated = false, _M_reading = false, _M_writing = false, 
            _M_pback = 0 '\000', _M_pback_cur_save = 0x0, _M_pback_end_save = 0x0, _M_pback_init = false, _M_codecvt = 0x7fae183af6b0 <(anonymous namespace)::codecvt_c>, 
            _M_ext_buf = 0x0, _M_ext_buf_size = 0, _M_ext_next = 0x0, _M_ext_end = 0x0}}
        headerEnd = {static npos = 18446744073709551615, _M_dataplus = {<std::allocator<char>> = {<__gnu_cxx::new_allocator<char>> = {<No data fields>}, <No data fields>}, 
            _M_p = 0x7ffd999efc10 "[HeaderEnd]"}, _M_string_length = 11, {_M_local_buf = "[HeaderEnd]\000\000\000\000", _M_allocated_capacity = 5004173617767204955}}
        line = {static npos = 18446744073709551615, _M_dataplus = {<std::allocator<char>> = {<__gnu_cxx::new_allocator<char>> = {<No data fields>}, <No data fields>}, 
            _M_p = 0x55aaa689e2d0 "[HeaderEnd]"}, _M_string_length = 11, {_M_local_buf = "<\000\000\000\000\000\000\000IcE\000\000\000\000", _M_allocated_capacity = 60}}
        headerEndCheck = true
        currPos = 169
        fileSize = 125169
        filter2 = {m_filter = 0x55aaa68bf9d0 "", m_size = 1000000, m_sizeInBytes = 125000, m_hashNum = 3, m_kmerSize = 4, m_dFPR = 0, m_nEntry = 0, m_tEntry = 0}
        queryIt2 = {m_seq = {static npos = 18446744073709551615, _M_dataplus = {<std::allocator<char>> = {<__gnu_cxx::new_allocator<char>> = {<No data fields>}, <No data fields>}, 
              _M_p = 0x7ffd999efcf0 "ACGTAC"}, _M_string_length = 6, {_M_local_buf = "ACGTAC\000\000\000\000\000\000\000\000\000", _M_allocated_capacity = 73947865891649}}, m_h = 3, 
          m_k = 4, m_hVec = 0x55aaa689e460, m_pos = 18446744073709551615, m_fhVal = 17023861349393640413, m_rhVal = 17023861349393640413}
        filter3 = 0x55aaa689e1e0
        tempMem = 332
(gdb)