Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Error #6

Open
amitpande74 opened this issue Apr 3, 2021 · 1 comment
Open

Error #6

amitpande74 opened this issue Apr 3, 2021 · 1 comment

Comments

@amitpande74
Copy link

Hi,
https://github.com/bcthomas/pullseq.git

returns
bash: https://github.com/bcthomas/pullseq.git: No such file or directory
Kindly help.
Additionally, when I downloaded the code I dont see ./configure

Am I doing something wrong ?
Kindly help.
@amitpande74
Copy link
Author

amitpande74 commented Apr 3, 2021 •
edited
Loading

Ok, was able to install pullseq via conda.
But could you please expand more on the regex.
I want to extract reads from paired end RNAseq fastq files which have the following:
ACGCTCTTCCGATCTNNNNNNNNNNNNNNNNNNNNNCAT[G]CTAGTTGTGGTTTGTC
where N is the barcode.
Kindly help.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
1 participant
@amitpande74