diff --git a/easyconfigs/b/BEAR-Python-MSc-Bioinformatics/BEAR-Python-MSc-Bioinformatics-2022b-foss-2022b.eb b/easyconfigs/b/BEAR-Python-MSc-Bioinformatics/BEAR-Python-MSc-Bioinformatics-2022b-foss-2022b.eb new file mode 100644 index 00000000..de09f3a7 --- /dev/null +++ b/easyconfigs/b/BEAR-Python-MSc-Bioinformatics/BEAR-Python-MSc-Bioinformatics-2022b-foss-2022b.eb @@ -0,0 +1,38 @@ +# This easyconfig was created by the BEAR Software team at the University of Birmingham. +easyblock = 'Bundle' + +name = 'BEAR-Python-MSc-Bioinformatics' +version = '2022b' + +homepage = "" +description = """This module provides access to several Python Data Science libraries.""" + +toolchain = {'name': 'foss', 'version': '2022b'} + +dependencies = [ + ('Python', '3.10.8'), + # ('BioServices', '1.10.1'), + ('matplotlib', '3.7.0'), + # ('mlxtend', '0.19.0'), + ('scikit-learn', '1.2.1'), + ('SciPy-bundle', '2023.02'), + ('Seaborn', '0.12.2'), + # ('TensorFlow', '2.7.1'), + # ('graphviz', '0.20.1'), + # ('gprofiler-official', '1.0.0'), + # ('intermine', '1.13.0'), + # ('pyhpo', '3.1.2'), + # ('scikit-plot', '0.3.7'), + # ('wittgenstein', '0.3.2'), + ('statsmodels', '0.14.0'), + ('plotly.py', '5.13.1'), + # ('sequenza-utils', '3.0.0', '-MSc'), + ('networkx', '3.0'), + # ('NLTK', '3.7'), + # ('OpenCV', '4.5.5', '-contrib'), + # ('MetaboLabPy', '0.8.4'), + # ('scikit-image', '0.19.1'), + # ('mvlearn', '0.5.0'), +] + +moduleclass = 'tools' diff --git a/easyconfigs/b/BEAR-R-bio/BEAR-R-bio-2022b-foss-2022b-R-4.3.1.eb b/easyconfigs/b/BEAR-R-bio/BEAR-R-bio-2022b-foss-2022b-R-4.3.1.eb new file mode 100644 index 00000000..ab18d332 --- /dev/null +++ b/easyconfigs/b/BEAR-R-bio/BEAR-R-bio-2022b-foss-2022b-R-4.3.1.eb @@ -0,0 +1,36 @@ +# This easyconfig was created by the BEAR Software team at the University of Birmingham. +easyblock = 'Bundle' + +name = 'BEAR-R-bio' +version = '2022b' +versionsuffix = '-R-%(rver)s' + +homepage = "" +description = """This module provides access to several R bio libraries.""" + +toolchain = {'name': 'foss', 'version': '2022b'} + +dependencies = [ + ('R', '4.3.1'), + ('R-bundle-Bioconductor', '3.17', versionsuffix), + # ('monocle', '2.24.1', versionsuffix), + # ('ottr', '1.2.0', versionsuffix), + # ('SpaTalk', '1.0', versionsuffix), + # ('celldex', '1.6.0', versionsuffix), + # ('clusterProfiler', '4.4.4', versionsuffix), + # ('ggfortify', '0.4.14', versionsuffix), + # ('maftools', '2.12.0', versionsuffix), + # ('nichenetr', '20220911', versionsuffix), + # ('cyCombine', '0.2.15', versionsuffix), + # ('msPurity', '1.22.0', versionsuffix), + # ('MSstats', '4.4.1', versionsuffix), + # ('faahKO', '1.36.0', versionsuffix), + # ('pandaR', '1.28.0', versionsuffix), + # ('iRF', '3.0.0', versionsuffix), + # ('mofapy2', '0.6.7'), + # ('MOFA2', '1.8.0', versionsuffix), + # ('smotefamily', '1.3.1', versionsuffix), + # ('phateR', '1.0.7', versionsuffix), +] + +moduleclass = 'bio'