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unable to install using install.sh script - package dependencies not available? #50

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mafuller opened this issue Apr 19, 2024 · 0 comments

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@mafuller
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I am trying to download and activate mgefinder on a Mac Ventura 13.2.1 with an Apple M2 Max chip.

I receive this error every time I try to run the install script -- even after adding conda forge and other channels to my conda environment, the same error appears. I am a new with coding, so this may be an easy fix but I have not been able to find a work around. Thanks!

"(base) mafuller@JV25QX0JKV MGEfinder % bash install.sh
Removing mgefinder environment if already installed...
Installing mgefinder environment...
Channels:

  • bioconda
  • defaults
  • conda-forge
    Platform: osx-arm64
    Collecting package metadata (repodata.json): done
    Solving environment: failed

PackagesNotFoundError: The following packages are not available from current channels:

  • zstd==1.3.7=h5bba6e5_0
  • zlib==1.2.11=h1de35cc_3
  • yaml==0.1.7=hc338f04_2
  • xz==5.2.4=h1de35cc_4
  • wrapt==1.11.2=py36h1de35cc_0
  • wheel==0.33.6=py36_0
  • urllib3==1.25.7=py36_0
  • tk==8.6.8=ha441bb4_0
  • tbb==2019.8=h04f5b5a_0
  • sqlite==3.30.1=ha441bb4_0
  • snakemake==3.13.3=py36_0
  • six==1.13.0=py36_0
  • setuptools==42.0.2=py36_0
  • samtools==1.9=h8aa4d43_12
  • requests==2.22.0=py36_1
  • readline==7.0=h1de35cc_5
  • pyyaml==5.2=py36h1de35cc_0
  • python==3.6.9=h359304d_0
  • pysocks==1.7.1=py36_0
  • pysftp==0.2.9=py36_0
  • pysam==0.15.3=py36h726f235_1
  • pyopenssl==19.1.0=py36_0
  • pynacl==1.3.0=py36h1de35cc_0
  • pycparser==2.19=py36_0
  • psutil==5.6.7=py36h1de35cc_0
  • pip==19.3.1=py36_0
  • perl==5.26.2=h4e221da_0
  • paramiko==2.6.0=py36_0
  • pandas==0.25.3=py36h0a44026_0
  • openssl==1.1.1d=h1de35cc_3
  • numpy-base==1.17.4=py36h6575580_0
  • numpy==1.17.4=py36h890c691_0
  • ncurses==6.1=h0a44026_1
  • mkl_random==1.1.0=py36ha771720_0
  • mkl_fft==1.0.15=py36h5e564d8_0
  • mkl-service==2.3.0=py36hfbe908c_0
  • mkl==2019.4=233
  • libxml2==2.9.9=hf6e021a_1
  • libwebp==1.0.1=hd73b212_0
  • libtiff==4.1.0=hcb84e12_0
  • libssh2==1.8.2=ha12b0ac_0
  • libsodium==1.0.16=h3efe00b_0
  • libpng==1.6.37=ha441bb4_0
  • libiconv==1.15=hdd342a3_7
  • libgfortran==3.0.1=h93005f0_2
  • libgd==2.2.5=h527e5b3_3
  • libffi==3.2.1=h475c297_4
  • libedit==3.1.20181209=hb402a30_0
  • libdeflate==1.0=h1de35cc_1
  • libcxxabi==4.0.1=hcfea43d_1
  • libcxx==4.0.1=hcfea43d_1
  • libcurl==7.67.0=h051b688_0
  • krb5==1.16.4=hddcf347_0
  • jpeg==9b=he5867d9_2
  • intel-openmp==2019.4=233
  • idna==2.8=py36_0
  • icu==58.2=h4b95b61_1
  • htslib==1.9=h3a161e8_7
  • giflib==5.1.4=h1de35cc_1
  • ftputil==3.2=py36_0
  • freetype==2.9.1=hb4e5f40_0
  • fontconfig==2.13.0=h5d5b041_1
  • filechunkio==1.6=py36_0
  • expat==2.2.6=h0a44026_0
  • emboss==6.6.0=h6debe1e_0
  • dropbox==5.2.1=py36_0
  • docutils==0.15.2=py36_0
  • curl==7.67.0=ha441bb4_0
  • cryptography==2.8=py36ha12b0ac_0
  • chardet==3.0.4=py36_1003
  • cffi==1.13.2=py36hb5b8e2f_0
  • certifi==2019.11.28=py36_0
  • cd-hit==4.8.1=hd9629dc_0
  • ca-certificates==2019.11.27=0
  • bzip2==1.0.8=h1de35cc_0
  • bwa==0.7.17=h2573ce8_7
  • bowtie2==2.3.5=py36h5c9b4e4_0
  • blas==1.0=mkl
  • bcrypt==3.1.7=py36h1de35cc_0
  • asn1crypto==1.2.0=py36_0

Current channels:

To search for alternate channels that may provide the conda package you're
looking for, navigate to

https://anaconda.org

and use the search bar at the top of the page.

Installation Complete.

Before running mgefinder, activate the mgefinder environment with

conda activate mgefinder

You can then run mgefinder by typing

mgefinder [command]
Send any questions to [email protected]"

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