From 8401a14c9d3c29a39ac41278c0ee6d796018db6b Mon Sep 17 00:00:00 2001 From: Chris Markiewicz Date: Fri, 31 Jan 2020 11:37:12 -0500 Subject: [PATCH] Permit AnalyticalApproach to be a string or list of strings. With example provided by Cyril Pernet. --- src/04-modality-specific-files/08-genetic-descriptor.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/src/04-modality-specific-files/08-genetic-descriptor.md b/src/04-modality-specific-files/08-genetic-descriptor.md index a3166d5e1a..f4bca62081 100644 --- a/src/04-modality-specific-files/08-genetic-descriptor.md +++ b/src/04-modality-specific-files/08-genetic-descriptor.md @@ -80,7 +80,7 @@ fields: | Field name | Definition | Values | | :----------------- | :-------------------------------------------------------------------------- | :--------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | | GeneticLevel | MANDATORY Describes the level of analysis | `Genetic`, `Genomic`, `Epigenomic`, `Transcriptomic`, `Metabolomic`, or `Proteomic` | -| AnalyticalApproach | OPTIONAL Methodology used to analyse the GeneticLevel | Value must be taken from [gapsolr][] under /Study/Molecular Data Type, for instance `SNP Genotypes (Array)` or `Methylation (CpG)` | +| AnalyticalApproach | OPTIONAL Methodology or methodologies used to analyse the GeneticLevel | String or list of strings. Each Value must be taken from [gapsolr][] under /Study/Molecular Data Type, for instance `SNP Genotypes (Array)` or `Methylation (CpG)` | | SampleOrigin | MANDATORY Describes from which tissue the genetic information was extracted | `blood`, `saliva`, `brain`, `csf`, `breast milk`, `bile`, `amniotic fluid`, `other biospecimen` | | TissueOrigin | OPTIONAL Describes the type of tissue analyzed for SampleOrigin `brain` | `gray matter`, `white matter`, `csf`, `meninges`, `macrovascular` or `microvascular` | | BrainLocation | OPTIONAL Refers to the location in space of the TissueOrigin | `MNI coordinate` or a `label` taken from the [Allen Brain Atlas][allen] possibly `layer` to refer to layer-specific gene expression, which can also tie up with laminar fMRI | @@ -91,7 +91,7 @@ fields: ```JSON { "GeneticLevel": "Genetic", - "AnalyticalApproach": "SNP Genotypes", + "AnalyticalApproach": ["Whole Genome Sequencing", "SNP/CNV Genotypes"], "SampleOrigin": "brain", "TissueOrigin": "gray matter", "CellType": "neuron",