From ba4d0ac7bc979dacc70ef1499df631b2b75753a0 Mon Sep 17 00:00:00 2001 From: Chris Markiewicz Date: Wed, 22 May 2024 09:32:18 -0400 Subject: [PATCH 1/4] chore(mailmap): Add Basile Pinsard --- .mailmap | 1 + 1 file changed, 1 insertion(+) diff --git a/.mailmap b/.mailmap index 50acff5c6..434204658 100644 --- a/.mailmap +++ b/.mailmap @@ -5,6 +5,7 @@ Alexander Ivanov Alexis Thual Ankur Sinha Antonin Rovai <81312414+arovai@users.noreply.github.com> +Basile Pinsard Bertrand Thirion Christopher J. Markiewicz Christopher J. Markiewicz From 1220667b6f6a25fea1427728b406d351efd198a4 Mon Sep 17 00:00:00 2001 From: Chris Markiewicz Date: Wed, 22 May 2024 09:32:37 -0400 Subject: [PATCH 2/4] chore(zenodo): Update Zenodo file --- .zenodo.json | 14 ++++++++++++++ 1 file changed, 14 insertions(+) diff --git a/.zenodo.json b/.zenodo.json index b4e437596..dc9ac1cfb 100644 --- a/.zenodo.json +++ b/.zenodo.json @@ -175,6 +175,11 @@ "affiliation": "Institute for Computational Medicine, Johns Hopkins University, Baltimore, MD, USA", "orcid": "0000-0001-8421-365X" }, + { + "affiliation": "Child Mind Institute", + "name": "Erkent, Alp", + "orcid": "0000-0002-8820-4782" + }, { "affiliation": "Université de Sherbrooke", "name": "Legarreta, Jon Haitz", @@ -223,6 +228,11 @@ "affiliation": "CEA, Inria", "name": "Thual, Alexis" }, + { + "affiliation": "University of Montréal, Montréal, Canada", + "name": "Pinsard, Basile", + "orcid": "0000-0002-4391-3075" + }, { "affiliation": "Berkeley Institute for Data Science; University of California at Berkeley", "name": "Holdgraf, Chris", @@ -242,6 +252,10 @@ "name": "Drew, William", "orcid": "0000-0002-9178-8731" }, + { + "name": "Khan, Ali", + "orcid": "0000-0002-0760-8647" + }, { "affiliation": "University College London", "name": "Sinha, Ankur", From 7b1f451e50510e16fedcee759336dd5c3d18120b Mon Sep 17 00:00:00 2001 From: Chris Markiewicz Date: Wed, 22 May 2024 09:32:53 -0400 Subject: [PATCH 3/4] doc(changes): 0.16.5 release notes --- CHANGELOG.rst | 21 +++++++++++++++++++++ 1 file changed, 21 insertions(+) diff --git a/CHANGELOG.rst b/CHANGELOG.rst index 1f9db94d7..2847a12f5 100644 --- a/CHANGELOG.rst +++ b/CHANGELOG.rst @@ -1,6 +1,27 @@ Changelog ========= +Version 0.16.5 (May 22, 2024) +----------------------------- + +Bug-fix release in the 0.16.x series. + +This release includes minor fixes, but reworks the testing +infrastructure and resolves Python 3.12 incompatibilities. + +* FIX: Handle FileNotFoundError in BIDSLayout init when is_derivative=True and validate=False (#1049) +* FIX: Add dwi root sbref, missing dwi entities to path patterns (#1059) +* ENH: Update indexer to treat .zarr as files not dirs (#1046) +* DOC: Deal with several warnings and errors in the doc build (#1061) +* TST: Add bids-examples tests to cover ieeg, eeg, dwi (#1060) +* MNT: Add Python 3.12 support (#1057) +* MNT: Use tox to simplify testing environment setup (#1055) +* MNT: Bump codecov/codecov-action from 3 to 4 (#1041) +* MNT: Bump bids-examples from `1a000d6` to `eff47f1` (#1039) +* MNT: Bump bids-examples from `b6e5234` to `1a000d6` (#1038) +* MNT: Bump actions/upload-artifact from 3 to 4 (#1037) +* MNT: Bump actions/setup-python from 4 to 5 (#1036) + Version 0.16.4 (November 30, 2023) ---------------------------------- From c744cecec6d1794745c32f0134fb6b5e6484bc6e Mon Sep 17 00:00:00 2001 From: Chris Markiewicz Date: Wed, 22 May 2024 10:53:06 -0400 Subject: [PATCH 4/4] chore(test-pypi): Avoid failures on duplicate commit counts --- .github/workflows/package.yml | 1 + 1 file changed, 1 insertion(+) diff --git a/.github/workflows/package.yml b/.github/workflows/package.yml index e3267b746..bc08f4ede 100644 --- a/.github/workflows/package.yml +++ b/.github/workflows/package.yml @@ -44,6 +44,7 @@ jobs: uses: pypa/gh-action-pypi-publish@release/v1 with: repository-url: https://test.pypi.org/legacy/ + skip-existing: true - name: Upload to PyPI (on tags) if: github.event_name == 'push' && startsWith(github.ref, 'refs/tags') uses: pypa/gh-action-pypi-publish@release/v1