diff --git a/bids/layout/tests/test_validation.py b/bids/layout/tests/test_validation.py index 15599a64..32e7b44a 100644 --- a/bids/layout/tests/test_validation.py +++ b/bids/layout/tests/test_validation.py @@ -15,843 +15,6 @@ def testvalidator(): return BIDSValidator() -# checks is_top_level() function true cases -def test_is_top_level_true(testvalidator): - target_list = [ - "/README", - "/CHANGES", - "/dataset_description.json", - "/participants.tsv", - "/participants.json" - ] - - for item in target_list: - result = testvalidator.is_top_level(item) - assert result - - -# checks is_top_level() function false cases -def test_is_top_level_false(testvalidator): - target_list = [ - "/RADME", # wrong filename - "/CANGES", # wrong filename - "/dataset_descrption.json", # wrong filename - "/dataset_description.jon", # wrong extension - "/participants.sv", # wrong extension - "/participnts.tsv", # wrong filename - "/particpants.json" # wrong filename - "/participants.son" # wrong extension - ] - - for item in target_list: - result = testvalidator.is_top_level(item) - assert not result - - -# checks is_associated_data() function true cases -def test_is_associated_data_true(testvalidator): - target_list = [ - "/code/", - "/derivatives/", - "/sourcedata/", - "/stimuli/", - ] - - for item in target_list: - result = testvalidator.is_associated_data(item) - assert result - - -# checks is_associated_data() function false cases -def test_is_associated_data_false(testvalidator): - target_list = [ - "/CODE/", - "/derivatves/", - "/source/", - "/stimli/", - "/.git/" - ] - - for item in target_list: - result = testvalidator.is_associated_data(item) - assert not result - - -# checks is_session_level() function true cases -def test_is_session_level_true(testvalidator): - target_list = [ - "/sub-01/sub-01_dwi.bval", - "/sub-01/sub-01_dwi.bvec", - "/sub-01/sub-01_dwi.json", - "/sub-01/sub-01_run-01_dwi.bval", - "/sub-01/sub-01_run-01_dwi.bvec", - "/sub-01/sub-01_run-01_dwi.json", - "/sub-01/sub-01_acq-singleband_dwi.bval", - "/sub-01/sub-01_acq-singleband_dwi.bvec", - "/sub-01/sub-01_acq-singleband_dwi.json", - "/sub-01/sub-01_acq-singleband_run-01_dwi.bval", - "/sub-01/sub-01_acq-singleband_run-01_dwi.bvec", - "/sub-01/sub-01_acq-singleband_run-01_dwi.json", - "/sub-01/ses-test/sub-01_ses-test_dwi.bval", - "/sub-01/ses-test/sub-01_ses-test_dwi.bvec", - "/sub-01/ses-test/sub-01_ses-test_dwi.json", - "/sub-01/ses-test/sub-01_ses-test_run-01_dwi.bval", - "/sub-01/ses-test/sub-01_ses-test_run-01_dwi.bvec", - "/sub-01/ses-test/sub-01_ses-test_run-01_dwi.json", - "/sub-01/ses-test/sub-01_ses-test_acq-singleband_dwi.bval", - "/sub-01/ses-test/sub-01_ses-test_acq-singleband_dwi.bvec", - "/sub-01/ses-test/sub-01_ses-test_acq-singleband_dwi.json", - "/sub-01/ses-test/sub-01_ses-test_acq-singleband_run-01_dwi.bval", - "/sub-01/ses-test/sub-01_ses-test_acq-singleband_run-01_dwi.bvec", - "/sub-01/ses-test/sub-01_ses-test_acq-singleband_run-01_dwi.json" - ] - - for item in target_list: - result = testvalidator.is_session_level(item) - assert result - - -# checks is_subject_level() function true cases -def test_is_subject_level_true(testvalidator): - target_list = [ - "/sub-01/sub-01_sessions.tsv", - "/sub-01/sub-01_sessions.json" - ] - - for item in target_list: - result = testvalidator.is_subject_level(item) - assert result - - -# checks is_subject_level() function false cases -def test_is_subject_false(testvalidator): - target_list = [ - "/sub-02/sub-01_sessions.tsv", # wrong sub id in the filename - "/sub-01_sessions.tsv", # missed subject id dir - "/sub-01/sub-01_sesions.tsv", # wrong modality - "/sub-01/sub-01_sesions.ext", # wrong extension - "/sub-01/sub-01_sessions.jon" # wrong extension - ] - - for item in target_list: - result = testvalidator.is_subject_level(item) - assert not result - - -# # checks is_anat() function true cases -# def test_is_anat_true(testvalidator): -# target_list = [ -# "/sub-01/anat/sub-01_T1w.json", -# "/sub-01/anat/sub-01_T1w.nii.gz", -# "/sub-01/anat/sub-01_rec-CSD_T1w.json", -# "/sub-01/anat/sub-01_rec-CSD_T1w.nii.gz", -# "/sub-01/anat/sub-01_acq-23_T1w.json", -# "/sub-01/anat/sub-01_acq-23_T1w.nii.gz", -# "/sub-01/anat/sub-01_acq-23_rec-CSD_T1w.json", -# "/sub-01/anat/sub-01_acq-23_rec-CSD_T1w.nii.gz", -# "/sub-01/anat/sub-01_run-23_T1w.json", -# "/sub-01/anat/sub-01_run-23_T1w.nii.gz", -# "/sub-01/anat/sub-01_rec-CSD_run-23_T1w.json", -# "/sub-01/anat/sub-01_rec-CSD_run-23_T1w.nii.gz", -# "/sub-01/anat/sub-01_acq-23_run-23_T1w.json", -# "/sub-01/anat/sub-01_acq-23_run-23_T1w.nii.gz", -# "/sub-01/anat/sub-01_acq-23_rec-CSD_run-23_T1w.json", -# "/sub-01/anat/sub-01_acq-23_rec-CSD_run-23_T1w.nii.gz", -# "/sub-01/ses-test/anat/sub-01_ses-test_T1w.json", -# "/sub-01/ses-test/anat/sub-01_ses-test_T1w.nii.gz", -# "/sub-01/ses-test/anat/sub-01_ses-test_rec-CSD_T1w.json", -# "/sub-01/ses-test/anat/sub-01_ses-test_rec-CSD_T1w.nii.gz", -# "/sub-01/ses-test/anat/sub-01_ses-test_acq-23_T1w.json", -# "/sub-01/ses-test/anat/sub-01_ses-test_acq-23_T1w.nii.gz", -# "/sub-01/ses-test/anat/sub-01_ses-test_acq-23_rec-CSD_T1w.json", -# "/sub-01/ses-test/anat/sub-01_ses-test_acq-23_rec-CSD_T1w.nii.gz", -# "/sub-01/ses-test/anat/sub-01_ses-test_run-23_T1w.json", -# "/sub-01/ses-test/anat/sub-01_ses-test_run-23_T1w.nii.gz", -# "/sub-01/ses-test/anat/sub-01_ses-test_rec-CSD_run-23_T1w.json", -# "/sub-01/ses-test/anat/sub-01_ses-test_rec-CSD_run-23_T1w.nii.gz", -# "/sub-01/ses-test/anat/sub-01_ses-test_acq-23_run-23_T1w.json", -# "/sub-01/ses-test/anat/sub-01_ses-test_acq-23_run-23_T1w.nii.gz", -# "/sub-01/ses-test/anat/sub-01_ses-test_acq-23_rec-CSD_run-23_T1w.json", -# "/sub-01/ses-test/anat/sub-01_ses-test_acq-23_rec-CSD_run-23_T1w.nii.gz"] - -# for item in target_list: -# result = testvalidator.is_anat(item) -# assert result - -# # checks is_anat() function false cases - - -# def test_is_anat_false(testvalidator): -# target_list = ["/sub-01/anat/sub-1_T1w.json", # subject inconsistency -# "/sub-01/anat/sub-01_dwi.nii.gz", # wrong modality suffix -# "/sub-01/anat/sub-02_rec-CSD_T1w.json", # subject inconsistency -# "/sub-01/anat/sub-01_rec-CS-D_T1w.nii.gz", # rec label wrong -# "/sub-01/anat/sub-01_acq-23_T1W.json", # modality suffix wrong -# "/sub-01/dwi/sub-01_acq-23_dwi.nii.gz", # wrong data type -# "/sub-01/anat/sub-01_acq-23_rec-CSD_T1w.exe", # wrong extension -# "/sub-01/anat/sub-01_acq-23_rec-CSD_T1w.niigz", # extension typo -# "/sub-01/anat/sub-01_run-2-3_T1w.json", # run label typo -# "/sub-01/anat/sub-01_rn-23_T1w.nii.gz", # run typo -# "/sub-01/ant/sub-01_rec-CS-D_run-23_T1w.json", # reconstruction label typo -# "/sub-1/anat/sub-01_rec-CSD_run-23_t1w.nii.gz", # T1w suffix typo -# "/sub-01/anat/sub-01_aq-23_run-23_T1w.json", # acq typo -# "/sub-01/anat/sub-01_acq-23_run-23_dwi.nii.gz", # wrong data type -# "/sub-01/anat/sub-01_acq-23_rc-CSD_run-23_T1w.json", # rec typo -# "/sub-01/anat/sub-O1_acq-23_rec-CSD_run-23_T1w.nii.gz", # 2nd subject id typo -# "/sub-01/ses-test/anat/sub-01_ses-retest_T1w.json", # ses inconsistency -# "/sub-01/ses-test/anat/sub-01_sestest_T1w.nii.gz", # 2nd session typo -# "/sub-01/ses-test/anat/sub-01_ses_test_rec-CSD_dwi.jsn", # extension typo -# "/sub-01/ses_test/anat/sub-01_ses_test_rec-CSD_T1w.bval", # wrong extension -# "/sub-01/ses-test/anat/sub-01_ses-test_acq-23_T1w.exe", # wrong extension -# ] -# for item in target_list: -# result = testvalidator.is_anat(item) -# assert not result - - -# # checks is_dwi() function true cases -# def test_is_dwi_true(testvalidator): -# target_list = [ -# "/sub-01/dwi/sub-01_dwi.nii.gz", -# "/sub-01/dwi/sub-01_dwi.bval", -# "/sub-01/dwi/sub-01_dwi.bvec", -# "/sub-01/dwi/sub-01_dwi.json", -# "/sub-01/dwi/sub-01_run-01_dwi.nii.gz", -# "/sub-01/dwi/sub-01_run-01_dwi.bval", -# "/sub-01/dwi/sub-01_run-01_dwi.bvec", -# "/sub-01/dwi/sub-01_run-01_dwi.json", -# "/sub-01/dwi/sub-01_acq-singleband_dwi.nii.gz", -# "/sub-01/dwi/sub-01_acq-singleband_dwi.bval", -# "/sub-01/dwi/sub-01_acq-singleband_dwi.bvec", -# "/sub-01/dwi/sub-01_acq-singleband_dwi.json", -# "/sub-01/dwi/sub-01_acq-singleband_run-01_dwi.nii.gz", -# "/sub-01/dwi/sub-01_acq-singleband_run-01_dwi.bval", -# "/sub-01/dwi/sub-01_acq-singleband_run-01_dwi.bvec", -# "/sub-01/dwi/sub-01_acq-singleband_run-01_dwi.json", -# "/sub-01/ses-test/dwi/sub-01_ses-test_dwi.nii.gz", -# "/sub-01/ses-test/dwi/sub-01_ses-test_dwi.bval", -# "/sub-01/ses-test/dwi/sub-01_ses-test_dwi.bvec", -# "/sub-01/ses-test/dwi/sub-01_ses-test_dwi.json", -# "/sub-01/ses-test/dwi/sub-01_ses-test_run-01_dwi.nii.gz", -# "/sub-01/ses-test/dwi/sub-01_ses-test_run-01_dwi.bval", -# "/sub-01/ses-test/dwi/sub-01_ses-test_run-01_dwi.bvec", -# "/sub-01/ses-test/dwi/sub-01_ses-test_run-01_dwi.json", -# "/sub-01/ses-test/dwi/sub-01_ses-test_acq-singleband_dwi.nii.gz", -# "/sub-01/ses-test/dwi/sub-01_ses-test_acq-singleband_dwi.bval", -# "/sub-01/ses-test/dwi/sub-01_ses-test_acq-singleband_dwi.bvec", -# "/sub-01/ses-test/dwi/sub-01_ses-test_acq-singleband_dwi.json", -# "/sub-01/ses-test/dwi/sub-01_ses-test_acq-singleband_run-01_dwi.nii.gz", -# "/sub-01/ses-test/dwi/sub-01_ses-test_acq-singleband_run-01_dwi.bval", -# "/sub-01/ses-test/dwi/sub-01_ses-test_acq-singleband_run-01_dwi.bvec", -# "/sub-01/ses-test/dwi/sub-01_ses-test_acq-singleband_run-01_dwi.json"] - -# for item in target_list: -# result = testvalidator.is_dwi(item) -# assert result - -# # checks is_dwi() function false cases - - -# def test_is_dwi_false(testvalidator): -# target_list = [ -# "/sub-01/dwi/sub-01_suffix-suff_acq-singleband_dwi.json", # redundant suffix -# "/sub-01/dwi/sub-01_acq-singleband__run-01_dwi.nii.gz", # wrong __ -# "/sub-01/dwi/sub-01_acq_run-01_dwi.bval", # missed -singleband in _acq -# "/sub-01/dwi/sub-01_acq-singleband_run_01_dwi.bvec", # wrong run_01 -# "/sub-01/dwi/sub-01_acq_singleband_run-01_dwi.json", # wrong acq_singleband_ -# "/sub_01/ses-test/dwi/sub-01_ses-test_dwi.nii.gz", # wrong sub_01 dir -# "/sub-01/ses_test/dwi/sub-01_ses-test_dwi.bval", # wrong ses_test dir -# "/sub-01/ses-retest/dwi/sub-01_ses-test_dwi.bvec", # wrong session in the filename -# "/sub-01/ses-test/dwi/sub-01_ses-retest_dwi.json", # wrong session in the filename -# "/sub-01/ses-test/dwi/sub-01_ses-test_run-01_brain.nii.gz", # wrong modality -# "/sub-01/ses-test/dwi/sub-01_ses-test_run-01.bval", # missed modality -# "/sub-01/ses-test/dwi/sub-01_ses-test_run-01_dwi.vec", # wrong extension -# "/sub-01/ses-test/dwi/sub-01_ses-test_run-01_dwi.jon", # wrong extension -# "/sub-01/ses-test/dwi/sub-01_ses-test_acq-singleband_dwi.ni.gz", # wrong extension -# "/sub-01/ses-test/dwi/sub-01_ses-test_acq-singleband_dwi.val", # wrong extension -# "/ses-test/dwi/sub-01/sub-01_ses-test_acq-singleband_dwi.bvec", # wrong dirs order -# "/sub-01/dwi/ses-test/sub-01_ses-test_acq-singleband_dwi.json", # wrong dirs order -# "/ses-test/sub-01/dwi/sub-01_ses-test_acq-singleband_run-01_dwi.nii.gz", # wrong dirs order -# "/sub-01/ses-test/sub-01_ses-test_acq-singleband_run-01_dwi.bval", # missed data type dir -# "/sub-01/dwi/sub-01_ses-test_acq-singleband_run-01_dwi.bvec", # missed session id dir -# "/ses-test/dwi/sub-01_ses-test_acq-singleband_run-01_dwi.json" # missed sub id dir -# ] - -# for item in target_list: -# result = testvalidator.is_dwi(item) -# assert not result - - -# # checks is_func() function true cases -# def test_is_func_true(testvalidator): -# target_list = [ -# "/sub-01/func/sub-01_task-task_bold.nii.gz", -# "/sub-01/func/sub-01_task-task_bold.nii", -# "/sub-01/func/sub-01_task-task_bold.json", -# "/sub-01/func/sub-01_task-task_sbref.nii.gz", -# "/sub-01/func/sub-01_task-task_sbref.json", -# "/sub-01/func/sub-01_task-task_events.json", -# "/sub-01/func/sub-01_task-task_events.tsv", -# "/sub-01/func/sub-01_task-task_physio.json", -# "/sub-01/func/sub-01_task-task_physio.tsv.gz", -# "/sub-01/func/sub-01_task-task_stim.json", -# "/sub-01/func/sub-01_task-task_stim.tsv.gz", -# "/sub-01/func/sub-01_task-task_defacemask.nii.gz", -# "/sub-01/func/sub-01_task-task_defacemask.nii", -# "/sub-01/func/sub-01_task-task_run-01_bold.nii.gz", -# "/sub-01/func/sub-01_task-task_run-01_bold.nii", -# "/sub-01/func/sub-01_task-task_run-01_bold.json", -# "/sub-01/func/sub-01_task-task_run-01_sbref.nii.gz", -# "/sub-01/func/sub-01_task-task_run-01_sbref.json", -# "/sub-01/func/sub-01_task-task_run-01_events.json", -# "/sub-01/func/sub-01_task-task_run-01_events.tsv", -# "/sub-01/func/sub-01_task-task_run-01_physio.json", -# "/sub-01/func/sub-01_task-task_run-01_physio.tsv.gz", -# "/sub-01/func/sub-01_task-task_run-01_stim.json", -# "/sub-01/func/sub-01_task-task_run-01_stim.tsv.gz", -# "/sub-01/func/sub-01_task-task_run-01_defacemask.nii.gz", -# "/sub-01/func/sub-01_task-task_run-01_defacemask.nii", -# "/sub-01/func/sub-01_task-task_rec-rec_bold.nii.gz", -# "/sub-01/func/sub-01_task-task_rec-rec_bold.nii", -# "/sub-01/func/sub-01_task-task_rec-rec_bold.json", -# "/sub-01/func/sub-01_task-task_rec-rec_sbref.nii.gz", -# "/sub-01/func/sub-01_task-task_rec-rec_sbref.json", -# "/sub-01/func/sub-01_task-task_rec-rec_events.json", -# "/sub-01/func/sub-01_task-task_rec-rec_events.tsv", -# "/sub-01/func/sub-01_task-task_rec-rec_physio.json", -# "/sub-01/func/sub-01_task-task_rec-rec_physio.tsv.gz", -# "/sub-01/func/sub-01_task-task_rec-rec_stim.json", -# "/sub-01/func/sub-01_task-task_rec-rec_stim.tsv.gz", -# "/sub-01/func/sub-01_task-task_rec-rec_defacemask.nii.gz", -# "/sub-01/func/sub-01_task-task_rec-rec_defacemask.nii", -# "/sub-01/func/sub-01_task-task_rec-rec_run-01_bold.nii.gz", -# "/sub-01/func/sub-01_task-task_rec-rec_run-01_bold.nii", -# "/sub-01/func/sub-01_task-task_rec-rec_run-01_bold.json", -# "/sub-01/func/sub-01_task-task_rec-rec_run-01_sbref.nii.gz", -# "/sub-01/func/sub-01_task-task_rec-rec_run-01_sbref.json", -# "/sub-01/func/sub-01_task-task_rec-rec_run-01_events.json", -# "/sub-01/func/sub-01_task-task_rec-rec_run-01_events.tsv", -# "/sub-01/func/sub-01_task-task_rec-rec_run-01_physio.json", -# "/sub-01/func/sub-01_task-task_rec-rec_run-01_physio.tsv.gz", -# "/sub-01/func/sub-01_task-task_rec-rec_run-01_stim.json", -# "/sub-01/func/sub-01_task-task_rec-rec_run-01_stim.tsv.gz", -# "/sub-01/func/sub-01_task-task_rec-rec_run-01_defacemask.nii.gz", -# "/sub-01/func/sub-01_task-task_rec-rec_run-01_defacemask.nii", -# "/sub-01/ses-test/func/sub-01_ses-test_task-task_bold.nii.gz", -# "/sub-01/ses-test/func/sub-01_ses-test_task-task_bold.nii", -# "/sub-01/ses-test/func/sub-01_ses-test_task-task_bold.json", -# "/sub-01/ses-test/func/sub-01_ses-test_task-task_sbref.nii.gz", -# "/sub-01/ses-test/func/sub-01_ses-test_task-task_sbref.json", -# "/sub-01/ses-test/func/sub-01_ses-test_task-task_events.json", -# "/sub-01/ses-test/func/sub-01_ses-test_task-task_events.tsv", -# "/sub-01/ses-test/func/sub-01_ses-test_task-task_physio.json", -# "/sub-01/ses-test/func/sub-01_ses-test_task-task_physio.tsv.gz", -# "/sub-01/ses-test/func/sub-01_ses-test_task-task_stim.json", -# "/sub-01/ses-test/func/sub-01_ses-test_task-task_stim.tsv.gz", -# "/sub-01/ses-test/func/sub-01_ses-test_task-task_defacemask.nii.gz", -# "/sub-01/ses-test/func/sub-01_ses-test_task-task_defacemask.nii", -# "/sub-01/ses-test/func/sub-01_ses-test_task-task_run-01_bold.nii.gz", -# "/sub-01/ses-test/func/sub-01_ses-test_task-task_run-01_bold.nii", -# "/sub-01/ses-test/func/sub-01_ses-test_task-task_run-01_bold.json", -# "/sub-01/ses-test/func/sub-01_ses-test_task-task_run-01_sbref.nii.gz", -# "/sub-01/ses-test/func/sub-01_ses-test_task-task_run-01_sbref.json", -# "/sub-01/ses-test/func/sub-01_ses-test_task-task_run-01_events.json", -# "/sub-01/ses-test/func/sub-01_ses-test_task-task_run-01_events.tsv", -# "/sub-01/ses-test/func/sub-01_ses-test_task-task_run-01_physio.json", -# "/sub-01/ses-test/func/sub-01_ses-test_task-task_run-01_physio.tsv.gz", -# "/sub-01/ses-test/func/sub-01_ses-test_task-task_run-01_stim.json", -# "/sub-01/ses-test/func/sub-01_ses-test_task-task_run-01_stim.tsv.gz", -# "/sub-01/ses-test/func/sub-01_ses-test_task-task_run-01_defacemask.nii.gz", -# "/sub-01/ses-test/func/sub-01_ses-test_task-task_run-01_defacemask.nii", -# "/sub-01/ses-test/func/sub-01_ses-test_task-task_rec-rec_bold.nii.gz", -# "/sub-01/ses-test/func/sub-01_ses-test_task-task_rec-rec_bold.nii", -# "/sub-01/ses-test/func/sub-01_ses-test_task-task_rec-rec_bold.json", -# "/sub-01/ses-test/func/sub-01_ses-test_task-task_rec-rec_sbref.nii.gz", -# "/sub-01/ses-test/func/sub-01_ses-test_task-task_rec-rec_sbref.json", -# "/sub-01/ses-test/func/sub-01_ses-test_task-task_rec-rec_events.json", -# "/sub-01/ses-test/func/sub-01_ses-test_task-task_rec-rec_events.tsv", -# "/sub-01/ses-test/func/sub-01_ses-test_task-task_rec-rec_physio.json", -# "/sub-01/ses-test/func/sub-01_ses-test_task-task_rec-rec_physio.tsv.gz", -# "/sub-01/ses-test/func/sub-01_ses-test_task-task_rec-rec_stim.json", -# "/sub-01/ses-test/func/sub-01_ses-test_task-task_rec-rec_stim.tsv.gz", -# "/sub-01/ses-test/func/sub-01_ses-test_task-task_rec-rec_defacemask.nii.gz", -# "/sub-01/ses-test/func/sub-01_ses-test_task-task_rec-rec_defacemask.nii", -# "/sub-01/ses-test/func/sub-01_ses-test_task-task_rec-rec_run-01_bold.nii.gz", -# "/sub-01/ses-test/func/sub-01_ses-test_task-task_rec-rec_run-01_bold.nii", -# "/sub-01/ses-test/func/sub-01_ses-test_task-task_rec-rec_run-01_bold.json", -# "/sub-01/ses-test/func/sub-01_ses-test_task-task_rec-rec_run-01_sbref.nii.gz", -# "/sub-01/ses-test/func/sub-01_ses-test_task-task_rec-rec_run-01_sbref.json", -# "/sub-01/ses-test/func/sub-01_ses-test_task-task_rec-rec_run-01_events.json", -# "/sub-01/ses-test/func/sub-01_ses-test_task-task_rec-rec_run-01_events.tsv", -# "/sub-01/ses-test/func/sub-01_ses-test_task-task_rec-rec_run-01_physio.json", -# "/sub-01/ses-test/func/sub-01_ses-test_task-task_rec-rec_run-01_physio.tsv.gz", -# "/sub-01/ses-test/func/sub-01_ses-test_task-task_rec-rec_run-01_stim.json", -# "/sub-01/ses-test/func/sub-01_ses-test_task-task_rec-rec_run-01_stim.tsv.gz", -# "/sub-01/ses-test/func/sub-01_ses-test_task-task_rec-rec_run-01_defacemask.nii.gz", -# "/sub-01/ses-test/func/sub-01_ses-test_task-task_rec-rec_run-01_defacemask.nii"] - -# for item in target_list: -# result = testvalidator.is_func(item) -# assert result - - -# # checks is_func() function false cases -# def test_is_func_false(testvalidator): -# target_list = [ -# "/sub-01/ses-test/func/sub--01_ses-test_task-task_rec-rec_stim.tsv.gz", # wrong -- -# "/sub-01/ses-test/func/sub-01__ses-test_task-task_rec-rec_defacemask.nii.gz", # wrong __ -# "/sub-01/ses-test/func/sub-01_ses_test_task-task_rec-rec_defacemask.nii", # wrong ses_test -# "/sub-01/ses-test/func/sub-01_task-task_rec-rec_run-01_bold.nii.gz", # missed session suffix and id in the filename -# "/sub-01/ses-test/func/ses-test_task-task_rec-rec_run-01_bold.nii", # missed subject suffix and id in the filename -# "/sub-01/ses-retest/func/sub-01_ses-test_task-task_rec-rec_run-01_sbref.nii.gz", # wrong session id in the filename -# "/sub-01/ses-test/func/sub-02_ses-test_task-task_rec-rec_run-01_sbref.json", # wrong subject id in the filename -# "/sub-01/ses-test/func/sub-01_ses-test_task-task_rec-rec_run-01.json", # missed modality -# "/sub-01/ses-test/func/sub-01_ses-test_task-task_rec-rec_run-01_events", # missed extension -# "/sub-01/func/ses-test/sub-01_ses-test_task-task_rec-rec_run-01_physio.json", # wrong dirs order -# "/ses-test/func/sub-01/sub-01_ses-test_task-task_rec-rec_run-01_physio.tsv.gz", # wrong dirs order -# "/ses-test/sub-01/func/sub-01_ses-test_task-task_rec-rec_run-01_stim.json", # wrong dirs order -# "/sub-01/ses-test/sub-01_ses-test_task-task_rec-rec_run-01_stim.tsv.gz", # missed data type -# "/sub-01/func/sub-01_ses-test_task-task_rec-rec_run-01_defacemask.nii.gz", # missed session dir -# "/ses-test/func/sub-01_ses-test_task-task_rec-rec_run-01_defacemask.nii" # missed subject dir -# ] - -# for item in target_list: -# result = testvalidator.is_func(item) -# assert not result - - -# # checks is_func_bold() true cases -# def test_is_func_bold_true(testvalidator): -# target_list = [ -# "/sub-01/func/sub-01_task-coding_bold.nii.gz", -# "/sub-01/func/sub-01_task-coding_sbref.nii.gz", -# "/sub-01/func/sub-01_task-coding_acq-23_bold.nii.gz", -# "/sub-01/func/sub-01_task-coding_acq-23_sbref.nii.gz", -# "/sub-01/func/sub-01_task-coding_run-23_bold.nii.gz", -# "/sub-01/func/sub-01_task-coding_run-23_sbref.nii.gz", -# "/sub-01/func/sub-01_task-coding_acq-23_run-23_bold.nii.gz", -# "/sub-01/func/sub-01_task-coding_acq-23_run-23_sbref.nii.gz", -# "/sub-01/ses-test/func/sub-01_ses-test_task-coding_bold.nii.gz", -# "/sub-01/ses-test/func/sub-01_ses-test_task-coding_sbref.nii.gz", -# "/sub-01/ses-test/func/sub-01_ses-test_task-coding_acq-23_bold.nii.gz", -# "/sub-01/ses-test/func/sub-01_ses-test_task-coding_acq-23_sbref.nii.gz", -# "/sub-01/ses-test/func/sub-01_ses-test_task-coding_run-23_bold.nii.gz", -# "/sub-01/ses-test/func/sub-01_ses-test_task-coding_run-23_sbref.nii.gz", -# "/sub-01/ses-test/func/sub-01_ses-test_task-coding_acq-23_run-23_bold.nii.gz", -# "/sub-01/ses-test/func/sub-01_ses-test_task-coding_acq-23_run-23_sbref.nii.gz"] - -# for item in target_list: -# result = testvalidator.is_func_bold(item) -# assert result - - -# # checks is_func_bold() false cases -# def test_is_func_bold_false(testvalidator): -# target_list = [ -# # func not bold -# "/sub-01/ses-test/func/sub-01_ses-test_task-coding_acq-23_events.tsv", -# "/sub-01/func/sub-01_task-coding_events.json", -# "/sub-01/func/sub-01_task-coding_acq-23_run-23_events.json", -# "/sub-01/ses-test/func/sub-01_ses-test_task-coding_bold.json", -# "/sub-01/func/sub-01_task-coding_acq-23_run-23_bold.json", -# "/sub-01/ses-test/func/sub-01_ses-test_task-coding_physio.json", -# "/sub-01/ses-test/func/sub-01_ses-test_task-coding_acq-23_run-23_physio.json", -# "/sub-01/func/sub-01_task-coding_run-23_events.tsv", -# "/sub-01/func/sub-01_task-coding_events.tsv", -# "/sub-01/func/sub-01_task-coding_acq-23_events.json", -# "/sub-01/ses-test/func/sub-01_ses-test_task-coding_run-23_events.tsv", -# "/sub-01/func/sub-01_task-coding_physio.json", -# "/sub-01/func/sub-01_task-coding_acq-23_physio.json", -# # various typos -# "/sub-01/func/sub-01_task-coding_sbref.ni.gz", # ni -# "/sub-01/func/sub-01_task-coding_acq_23_bold.nii.gz", # _23 -# "/sub-01/func/sub-01_task-coding_acq-23_sbrf.nii.gz", # sbrf -# "/sub-01/func/sub-02_task-coding_run-23_bold.nii.gz", # sub-02 -# "/sub-01/func/sub-01_task-coding-run-23_sbref.nii.gz", # -run -# "/sub-01/func/sub-01_task_coding_acq-23_run-23_bold.nii.gz", # _coding -# "/sub-01/func/sub-01-task-coding_acq-23_run-23_sbref.nii.gz", # -task -# "/sub-01/ses-test/func/sub-01_ses-retest_task-coding_bold.nii.gz", # ses-retest -# "/sub-01/ses-test/func/sub-02_ses-test_task-coding_sbref.nii.gz", # sub-02 -# "/sub-01/ses-test/func/sub-01_ses-test_task-coding_acq-23_blad.nii.gz", # blad -# "/sub-01/ses-test/func/sub-01_ses-test-task-coding_acq-23_sbref.nii.gz", # -task -# "/sub-01/ses-test/anat/sub-01_ses-test_task-coding_run-23_bold.nii.gz", # anat -# "/sub-01/ses-test/anat/sub-01_ses-test_task-coding_run-23_sbref.nii.gz", # anat -# "/sub-01/ses-test/dwi/sub-01_ses-test_task-coding_acq-23_run-23_bold.nii.gz", # dwi -# "/sub-01/ses-test/dwi/sub-01_ses-test_task-coding_acq-23_run-23_sbref.nii.gz" # dwi -# ] - -# for item in target_list: -# result = testvalidator.is_func_bold(item) -# assert not result - - -# # checks is_behavioral() function true cases -# def test_is_behavioral_true(testvalidator): -# target_list = [ -# "/sub-01/beh/sub-01_task-task_events.tsv", -# "/sub-01/beh/sub-01_task-task_events.json", -# "/sub-01/beh/sub-01_task-task_beh.json", -# "/sub-01/beh/sub-01_task-task_physio.json", -# "/sub-01/beh/sub-01_task-task_physio.tsv.gz", -# "/sub-01/beh/sub-01_task-task_stim.json", -# "/sub-01/beh/sub-01_task-task_stim.tsv.gz", -# "/sub-01/ses-test/beh/sub-01_ses-test_task-task_events.tsv", -# "/sub-01/ses-test/beh/sub-01_ses-test_task-task_events.json", -# "/sub-01/ses-test/beh/sub-01_ses-test_task-task_beh.json", -# "/sub-01/ses-test/beh/sub-01_ses-test_task-task_physio.json", -# "/sub-01/ses-test/beh/sub-01_ses-test_task-task_physio.tsv.gz", -# "/sub-01/ses-test/beh/sub-01_ses-test_task-task_stim.json", -# "/sub-01/ses-test/beh/sub-01_ses-test_task-task_stim.tsv.gz", -# ] - -# for item in target_list: -# result = testvalidator.is_behavioral(item) -# assert result - - -# # checks is_behavioral() function false cases -# def test_is_behavioral_false(testvalidator): -# target_list = [ -# "/sub-01/beeh/sub-01_task-task_events.tsv", # wrong data type -# "/sub-01/beh/sub-01_suff-suff_task-task_events.json", # wrong suffix -# "/sub-01/beh/sub-02_task-task_beh.json", # wrong sub id in the filename -# "/sub-01/beh/sub-01_task_task_physio.json", # wrong task_task -# "/sub-01/beh/sub-01_task-task_phycoo.tsv.gz", # wrong modality -# "/sub-01/beh/sub-01_task-task_stim.jsn", # wrong extension -# "/sub-01/beh/sub-01_task-task.tsv.gz", # missed modality -# "/sub-01/ses-test/beh/sub-01_ses-test_task-task_events", # missed extension -# "/sub-01/beh/ses-test/sub-01_ses-test_task-task_events.json", # wrong dirs order -# "/ses-test/beh/sub-01/sub-01_ses-test_task-task_beh.json", # wrong dirs order -# "/ses-test/sub-01/beh/sub-01_ses-test_task-task_physio.json", # wrong dirs order -# "/sub-01/ses-test/sub-01_ses-test_task-task_physio.tsv.gz", # missed data type dir -# "/sub-01/beh/sub-01_ses-test_task-task_stim.json", # missed session id dir -# "/ses-test/beh/sub-01_ses-test_task-task_stim.tsv.gz", # missed subject id dir -# ] - -# for item in target_list: -# result = testvalidator.is_behavioral(item) -# assert not result - - -# # checks is_cont() function true cases -# def test_is_cont_true(testvalidator): -# target_list = [ -# "/sub-01/ses-test/func/sub-01_ses-test_task-nback_physio.tsv.gz", -# "/sub-01/ses-test/func/sub-01_ses-test_task-nback_physio.json", -# "/sub-01/ses-test/func/sub-01_ses-test_task-nback_stim.tsv.gz", -# "/sub-01/ses-test/func/sub-01_ses-test_task-nback_stim.json", -# "/sub-01/ses-test/func/sub-01_ses-test_task-nback_recording-saturation_physio.tsv.gz", -# "/sub-01/ses-test/func/sub-01_ses-test_task-nback_recording-saturation_physio.json", -# "/sub-01/ses-test/func/sub-01_ses-test_task-nback_recording-saturation_stim.tsv.gz", -# "/sub-01/ses-test/func/sub-01_ses-test_task-nback_recording-saturation_stim.json", -# "/sub-01/ses-test/beh/sub-01_ses-test_task-nback_physio.tsv.gz", -# "/sub-01/ses-test/beh/sub-01_ses-test_task-nback_physio.json", -# "/sub-01/ses-test/beh/sub-01_ses-test_task-nback_stim.tsv.gz", -# "/sub-01/ses-test/beh/sub-01_ses-test_task-nback_stim.json", -# "/sub-01/ses-test/beh/sub-01_ses-test_task-nback_recording-saturation_physio.tsv.gz", -# "/sub-01/ses-test/beh/sub-01_ses-test_task-nback_recording-saturation_physio.json", -# "/sub-01/ses-test/beh/sub-01_ses-test_task-nback_recording-saturation_stim.tsv.gz", -# "/sub-01/ses-test/beh/sub-01_ses-test_task-nback_recording-saturation_stim.json", -# ] - -# for item in target_list: -# result = testvalidator.is_cont(item) -# assert result - - -# # checks is_cont() function false cases -# def test_is_cont_false(testvalidator): -# target_list = [ -# "/sub-01/ses-test/func/sub--01_ses-test_task-nback_physio.tsv.gz", # wrong -- -# "/sub-01/ses-test/func/sub-01__ses-test_task-nback_physio.json", # wrong __ -# "/sb-01/ses-test/func/sub-01_ses-test_task-nback_stim.tsv.gz", # wrong subject dir -# "/sub-01/ss-test/func/sub-01_ses-test_task-nback_stim.json", # wrong session dir -# "/sub-01/ses-test/dwi/sub-01_ses-test_task-nback_recording-saturation_physio.tsv.gz", # wrong data type -# "/sub-01/ses-test/func/sub-01_ses-test_tsk-nback_recording-saturation_physio.json", # wrong suffix tsk- -# "/sub-01/ses-test/func/sub-01_ses-retest_task-nback_recording-saturation_stim.tsv.gz", # wrong session id in the filename -# "/sub_01/ses-test/func/sub-02_ses-test_task-nback_recording-saturation_stim.json", # wrong subject id in the filename -# "/sub-01/beh/ses-test/sub-01_ses-test_task-nback_physio.tsv.gz", # wrong dirs order -# "/ses-test/beh/sub-01/sub-01_ses-test_task-nback_physio.json", # wrong dirs order -# "/ses-test/sub-01/beh/sub-01_ses-test_task-nback_stim.tsv.gz", # wrong dirs order -# "/sub-01/ses-test/beh/sub-01_ses-test_task-nback.json", # missed modality -# "/sub-01/ses-test/beh/sub-01_ses-test_task-nback_recording-saturation_physio.", # missed extension -# "/sub-01/ses-test/sub-01_ses-test_task-nback_recording-saturation_physio.json", # missed data type dir -# "/sub-01/beh/sub-01_ses-test_task-nback_recording-saturation_stim.tsv.gz", # missed session id dir -# "/ses-test/beh/sub-01_ses-test_task-nback_recording-saturation_stim.json" # missed sub id dir -# ] - -# for item in target_list: -# result = testvalidator.is_cont(item) -# assert not result - - -# # checks is_field_map() function true cases -# def test_is_field_map_true(testvalidator): -# target_list = [ -# "/sub-01/fmap/sub-01_phasediff.nii.gz", -# "/sub-01/fmap/sub-01_phasediff.json", -# "/sub-01/fmap/sub-01_phasediff.nii", -# "/sub-01/fmap/sub-01_phase1.nii.gz", -# "/sub-01/fmap/sub-01_phase1.json", -# "/sub-01/fmap/sub-01_phase1.nii", -# "/sub-01/fmap/sub-01_phase2.nii.gz", -# "/sub-01/fmap/sub-01_phase2.json", -# "/sub-01/fmap/sub-01_phase2.nii", -# "/sub-01/fmap/sub-01_magnitude.nii.gz", -# "/sub-01/fmap/sub-01_magnitude.json", -# "/sub-01/fmap/sub-01_magnitude.nii", -# "/sub-01/fmap/sub-01_magnitude1.nii.gz", -# "/sub-01/fmap/sub-01_magnitude1.json", -# "/sub-01/fmap/sub-01_magnitude1.nii", -# "/sub-01/fmap/sub-01_magnitude2.nii.gz", -# "/sub-01/fmap/sub-01_magnitude2.json", -# "/sub-01/fmap/sub-01_magnitude2.nii", -# "/sub-01/fmap/sub-01_fieldmap.nii.gz", -# "/sub-01/fmap/sub-01_fieldmap.json", -# "/sub-01/fmap/sub-01_fieldmap.nii", -# "/sub-01/fmap/sub-01_run-01_phasediff.nii.gz", -# "/sub-01/fmap/sub-01_run-01_phasediff.json", -# "/sub-01/fmap/sub-01_run-01_phasediff.nii", -# "/sub-01/fmap/sub-01_run-01_phase1.nii.gz", -# "/sub-01/fmap/sub-01_run-01_phase1.json", -# "/sub-01/fmap/sub-01_run-01_phase1.nii", -# "/sub-01/fmap/sub-01_run-01_phase2.nii.gz", -# "/sub-01/fmap/sub-01_run-01_phase2.json", -# "/sub-01/fmap/sub-01_run-01_phase2.nii", -# "/sub-01/fmap/sub-01_run-01_magnitude.nii.gz", -# "/sub-01/fmap/sub-01_run-01_magnitude.json", -# "/sub-01/fmap/sub-01_run-01_magnitude.nii", -# "/sub-01/fmap/sub-01_run-01_magnitude1.nii.gz", -# "/sub-01/fmap/sub-01_run-01_magnitude1.json", -# "/sub-01/fmap/sub-01_run-01_magnitude1.nii", -# "/sub-01/fmap/sub-01_run-01_magnitude2.nii.gz", -# "/sub-01/fmap/sub-01_run-01_magnitude2.json", -# "/sub-01/fmap/sub-01_run-01_magnitude2.nii", -# "/sub-01/fmap/sub-01_run-01_fieldmap.nii.gz", -# "/sub-01/fmap/sub-01_run-01_fieldmap.json", -# "/sub-01/fmap/sub-01_run-01_fieldmap.nii", -# "/sub-01/fmap/sub-01_dir-dirlabel_epi.nii.gz", -# "/sub-01/fmap/sub-01_dir-dirlabel_epi.json", -# "/sub-01/fmap/sub-01_dir-dirlabel_epi.nii", -# "/sub-01/fmap/sub-01_dir-dirlabel_run-01_epi.nii.gz", -# "/sub-01/fmap/sub-01_dir-dirlabel_run-01_epi.json", -# "/sub-01/fmap/sub-01_dir-dirlabel_run-01_epi.nii", -# "/sub-01/fmap/sub-01_acq-singleband_phasediff.nii.gz", -# "/sub-01/fmap/sub-01_acq-singleband_phasediff.json", -# "/sub-01/fmap/sub-01_acq-singleband_phasediff.nii", -# "/sub-01/fmap/sub-01_acq-singleband_phase1.nii.gz", -# "/sub-01/fmap/sub-01_acq-singleband_phase1.json", -# "/sub-01/fmap/sub-01_acq-singleband_phase1.nii", -# "/sub-01/fmap/sub-01_acq-singleband_phase2.nii.gz", -# "/sub-01/fmap/sub-01_acq-singleband_phase2.json", -# "/sub-01/fmap/sub-01_acq-singleband_phase2.nii", -# "/sub-01/fmap/sub-01_acq-singleband_magnitude.nii.gz", -# "/sub-01/fmap/sub-01_acq-singleband_magnitude.json", -# "/sub-01/fmap/sub-01_acq-singleband_magnitude.nii", -# "/sub-01/fmap/sub-01_acq-singleband_magnitude1.nii.gz", -# "/sub-01/fmap/sub-01_acq-singleband_magnitude1.json", -# "/sub-01/fmap/sub-01_acq-singleband_magnitude1.nii", -# "/sub-01/fmap/sub-01_acq-singleband_magnitude2.nii.gz", -# "/sub-01/fmap/sub-01_acq-singleband_magnitude2.json", -# "/sub-01/fmap/sub-01_acq-singleband_magnitude2.nii", -# "/sub-01/fmap/sub-01_acq-singleband_fieldmap.nii.gz", -# "/sub-01/fmap/sub-01_acq-singleband_fieldmap.json", -# "/sub-01/fmap/sub-01_acq-singleband_fieldmap.nii", -# "/sub-01/fmap/sub-01_acq-singleband_run-01_phasediff.nii.gz", -# "/sub-01/fmap/sub-01_acq-singleband_run-01_phasediff.json", -# "/sub-01/fmap/sub-01_acq-singleband_run-01_phasediff.nii", -# "/sub-01/fmap/sub-01_acq-singleband_run-01_phase1.nii.gz", -# "/sub-01/fmap/sub-01_acq-singleband_run-01_phase1.json", -# "/sub-01/fmap/sub-01_acq-singleband_run-01_phase1.nii", -# "/sub-01/fmap/sub-01_acq-singleband_run-01_phase2.nii.gz", -# "/sub-01/fmap/sub-01_acq-singleband_run-01_phase2.json", -# "/sub-01/fmap/sub-01_acq-singleband_run-01_phase2.nii", -# "/sub-01/fmap/sub-01_acq-singleband_run-01_magnitude.nii.gz", -# "/sub-01/fmap/sub-01_acq-singleband_run-01_magnitude.json", -# "/sub-01/fmap/sub-01_acq-singleband_run-01_magnitude.nii", -# "/sub-01/fmap/sub-01_acq-singleband_run-01_magnitude1.nii.gz", -# "/sub-01/fmap/sub-01_acq-singleband_run-01_magnitude1.json", -# "/sub-01/fmap/sub-01_acq-singleband_run-01_magnitude1.nii", -# "/sub-01/fmap/sub-01_acq-singleband_run-01_magnitude2.nii.gz", -# "/sub-01/fmap/sub-01_acq-singleband_run-01_magnitude2.json", -# "/sub-01/fmap/sub-01_acq-singleband_run-01_magnitude2.nii", -# "/sub-01/fmap/sub-01_acq-singleband_run-01_fieldmap.nii.gz", -# "/sub-01/fmap/sub-01_acq-singleband_run-01_fieldmap.json", -# "/sub-01/fmap/sub-01_acq-singleband_run-01_fieldmap.nii", -# "/sub-01/fmap/sub-01_acq-singleband_dir-dirlabel_epi.nii.gz", -# "/sub-01/fmap/sub-01_acq-singleband_dir-dirlabel_epi.json", -# "/sub-01/fmap/sub-01_acq-singleband_dir-dirlabel_epi.nii", -# "/sub-01/fmap/sub-01_acq-singleband_dir-dirlabel_run-01_epi.nii.gz", -# "/sub-01/fmap/sub-01_acq-singleband_dir-dirlabel_run-01_epi.json", -# "/sub-01/fmap/sub-01_acq-singleband_dir-dirlabel_run-01_epi.nii", -# "/sub-01/ses-test/fmap/sub-01_ses-test_phasediff.nii.gz", -# "/sub-01/ses-test/fmap/sub-01_ses-test_phasediff.json", -# "/sub-01/ses-test/fmap/sub-01_ses-test_phasediff.nii", -# "/sub-01/ses-test/fmap/sub-01_ses-test_phase1.nii.gz", -# "/sub-01/ses-test/fmap/sub-01_ses-test_phase1.json", -# "/sub-01/ses-test/fmap/sub-01_ses-test_phase1.nii", -# "/sub-01/ses-test/fmap/sub-01_ses-test_phase2.nii.gz", -# "/sub-01/ses-test/fmap/sub-01_ses-test_phase2.json", -# "/sub-01/ses-test/fmap/sub-01_ses-test_phase2.nii", -# "/sub-01/ses-test/fmap/sub-01_ses-test_magnitude.nii.gz", -# "/sub-01/ses-test/fmap/sub-01_ses-test_magnitude.json", -# "/sub-01/ses-test/fmap/sub-01_ses-test_magnitude.nii", -# "/sub-01/ses-test/fmap/sub-01_ses-test_magnitude1.nii.gz", -# "/sub-01/ses-test/fmap/sub-01_ses-test_magnitude1.json", -# "/sub-01/ses-test/fmap/sub-01_ses-test_magnitude1.nii", -# "/sub-01/ses-test/fmap/sub-01_ses-test_magnitude2.nii.gz", -# "/sub-01/ses-test/fmap/sub-01_ses-test_magnitude2.json", -# "/sub-01/ses-test/fmap/sub-01_ses-test_magnitude2.nii", -# "/sub-01/ses-test/fmap/sub-01_ses-test_fieldmap.nii.gz", -# "/sub-01/ses-test/fmap/sub-01_ses-test_fieldmap.json", -# "/sub-01/ses-test/fmap/sub-01_ses-test_fieldmap.nii", -# "/sub-01/ses-test/fmap/sub-01_ses-test_run-01_phasediff.nii.gz", -# "/sub-01/ses-test/fmap/sub-01_ses-test_run-01_phasediff.json", -# "/sub-01/ses-test/fmap/sub-01_ses-test_run-01_phasediff.nii", -# "/sub-01/ses-test/fmap/sub-01_ses-test_run-01_phase1.nii.gz", -# "/sub-01/ses-test/fmap/sub-01_ses-test_run-01_phase1.json", -# "/sub-01/ses-test/fmap/sub-01_ses-test_run-01_phase1.nii", -# "/sub-01/ses-test/fmap/sub-01_ses-test_run-01_phase2.nii.gz", -# "/sub-01/ses-test/fmap/sub-01_ses-test_run-01_phase2.json", -# "/sub-01/ses-test/fmap/sub-01_ses-test_run-01_phase2.nii", -# "/sub-01/ses-test/fmap/sub-01_ses-test_run-01_magnitude.nii.gz", -# "/sub-01/ses-test/fmap/sub-01_ses-test_run-01_magnitude.json", -# "/sub-01/ses-test/fmap/sub-01_ses-test_run-01_magnitude.nii", -# "/sub-01/ses-test/fmap/sub-01_ses-test_run-01_magnitude1.nii.gz", -# "/sub-01/ses-test/fmap/sub-01_ses-test_run-01_magnitude1.json", -# "/sub-01/ses-test/fmap/sub-01_ses-test_run-01_magnitude1.nii", -# "/sub-01/ses-test/fmap/sub-01_ses-test_run-01_magnitude2.nii.gz", -# "/sub-01/ses-test/fmap/sub-01_ses-test_run-01_magnitude2.json", -# "/sub-01/ses-test/fmap/sub-01_ses-test_run-01_magnitude2.nii", -# "/sub-01/ses-test/fmap/sub-01_ses-test_run-01_fieldmap.nii.gz", -# "/sub-01/ses-test/fmap/sub-01_ses-test_run-01_fieldmap.json", -# "/sub-01/ses-test/fmap/sub-01_ses-test_run-01_fieldmap.nii", -# "/sub-01/ses-test/fmap/sub-01_ses-test_dir-dirlabel_epi.nii.gz", -# "/sub-01/ses-test/fmap/sub-01_ses-test_dir-dirlabel_epi.json", -# "/sub-01/ses-test/fmap/sub-01_ses-test_dir-dirlabel_epi.nii", -# "/sub-01/ses-test/fmap/sub-01_ses-test_dir-dirlabel_run-01_epi.nii.gz", -# "/sub-01/ses-test/fmap/sub-01_ses-test_dir-dirlabel_run-01_epi.json", -# "/sub-01/ses-test/fmap/sub-01_ses-test_dir-dirlabel_run-01_epi.nii", -# "/sub-01/ses-test/fmap/sub-01_ses-test_acq-singleband_phasediff.nii.gz", -# "/sub-01/ses-test/fmap/sub-01_ses-test_acq-singleband_phasediff.json", -# "/sub-01/ses-test/fmap/sub-01_ses-test_acq-singleband_phasediff.nii", -# "/sub-01/ses-test/fmap/sub-01_ses-test_acq-singleband_phase1.nii.gz", -# "/sub-01/ses-test/fmap/sub-01_ses-test_acq-singleband_phase1.json", -# "/sub-01/ses-test/fmap/sub-01_ses-test_acq-singleband_phase1.nii", -# "/sub-01/ses-test/fmap/sub-01_ses-test_acq-singleband_phase2.nii.gz", -# "/sub-01/ses-test/fmap/sub-01_ses-test_acq-singleband_phase2.json", -# "/sub-01/ses-test/fmap/sub-01_ses-test_acq-singleband_phase2.nii", -# "/sub-01/ses-test/fmap/sub-01_ses-test_acq-singleband_magnitude.nii.gz", -# "/sub-01/ses-test/fmap/sub-01_ses-test_acq-singleband_magnitude.json", -# "/sub-01/ses-test/fmap/sub-01_ses-test_acq-singleband_magnitude.nii", -# "/sub-01/ses-test/fmap/sub-01_ses-test_acq-singleband_magnitude1.nii.gz", -# "/sub-01/ses-test/fmap/sub-01_ses-test_acq-singleband_magnitude1.json", -# "/sub-01/ses-test/fmap/sub-01_ses-test_acq-singleband_magnitude1.nii", -# "/sub-01/ses-test/fmap/sub-01_ses-test_acq-singleband_magnitude2.nii.gz", -# "/sub-01/ses-test/fmap/sub-01_ses-test_acq-singleband_magnitude2.json", -# "/sub-01/ses-test/fmap/sub-01_ses-test_acq-singleband_magnitude2.nii", -# "/sub-01/ses-test/fmap/sub-01_ses-test_acq-singleband_fieldmap.nii.gz", -# "/sub-01/ses-test/fmap/sub-01_ses-test_acq-singleband_fieldmap.json", -# "/sub-01/ses-test/fmap/sub-01_ses-test_acq-singleband_fieldmap.nii", -# "/sub-01/ses-test/fmap/sub-01_ses-test_acq-singleband_run-01_phasediff.nii.gz", -# "/sub-01/ses-test/fmap/sub-01_ses-test_acq-singleband_run-01_phasediff.json", -# "/sub-01/ses-test/fmap/sub-01_ses-test_acq-singleband_run-01_phasediff.nii", -# "/sub-01/ses-test/fmap/sub-01_ses-test_acq-singleband_run-01_phase1.nii.gz", -# "/sub-01/ses-test/fmap/sub-01_ses-test_acq-singleband_run-01_phase1.json", -# "/sub-01/ses-test/fmap/sub-01_ses-test_acq-singleband_run-01_phase1.nii", -# "/sub-01/ses-test/fmap/sub-01_ses-test_acq-singleband_run-01_phase2.nii.gz", -# "/sub-01/ses-test/fmap/sub-01_ses-test_acq-singleband_run-01_phase2.json", -# "/sub-01/ses-test/fmap/sub-01_ses-test_acq-singleband_run-01_phase2.nii", -# "/sub-01/ses-test/fmap/sub-01_ses-test_acq-singleband_run-01_magnitude.nii.gz", -# "/sub-01/ses-test/fmap/sub-01_ses-test_acq-singleband_run-01_magnitude.json", -# "/sub-01/ses-test/fmap/sub-01_ses-test_acq-singleband_run-01_magnitude.nii", -# "/sub-01/ses-test/fmap/sub-01_ses-test_acq-singleband_run-01_magnitude1.nii.gz", -# "/sub-01/ses-test/fmap/sub-01_ses-test_acq-singleband_run-01_magnitude1.json", -# "/sub-01/ses-test/fmap/sub-01_ses-test_acq-singleband_run-01_magnitude1.nii", -# "/sub-01/ses-test/fmap/sub-01_ses-test_acq-singleband_run-01_magnitude2.nii.gz", -# "/sub-01/ses-test/fmap/sub-01_ses-test_acq-singleband_run-01_magnitude2.json", -# "/sub-01/ses-test/fmap/sub-01_ses-test_acq-singleband_run-01_magnitude2.nii", -# "/sub-01/ses-test/fmap/sub-01_ses-test_acq-singleband_run-01_fieldmap.nii.gz", -# "/sub-01/ses-test/fmap/sub-01_ses-test_acq-singleband_run-01_fieldmap.json", -# "/sub-01/ses-test/fmap/sub-01_ses-test_acq-singleband_run-01_fieldmap.nii", -# "/sub-01/ses-test/fmap/sub-01_ses-test_acq-singleband_dir-dirlabel_epi.nii.gz", -# "/sub-01/ses-test/fmap/sub-01_ses-test_acq-singleband_dir-dirlabel_epi.json", -# "/sub-01/ses-test/fmap/sub-01_ses-test_acq-singleband_dir-dirlabel_epi.nii", -# "/sub-01/ses-test/fmap/sub-01_ses-test_acq-singleband_dir-dirlabel_run-01_epi.nii.gz", -# "/sub-01/ses-test/fmap/sub-01_ses-test_acq-singleband_dir-dirlabel_run-01_epi.json", -# "/sub-01/ses-test/fmap/sub-01_ses-test_acq-singleband_dir-dirlabel_run-01_epi.nii"] - -# for item in target_list: -# result = testvalidator.is_field_map(item) -# assert result - - -# # checks is_field_map() function false cases -# def test_is_field_map_false(testvalidator): -# target_list = [ -# "/sub-01/ses-test/fmap/sub--01_ses-test_acq-singleband_run-01_magnitude.json", # wrong -- -# "/sub-01/ses-test/fmap/sub-01_ses-test__acq-singleband_run-01_magnitude.nii", # wrong __ -# "/sub-01/ses-test/fmap/sub-01-ses-test_acq-singleband_run-01_magnitude1.nii.gz", # wrong 01-ses -# "/sub-01/ses-test/fmap/sub-01_ses-test_acq_singleband_run-01_magnitude1.json", # wrong acq_singleband -# "/sub-01/ses-test/fmap/sub-01_ses-test_acq-singleband_run-01_magnitude1.ni", # wrong extension -# "/sub-01/ses-test/fmap/sub-01_ses-test_acq-singleband_run-01_magnitude3.nii.gz", # wrong modality -# "/sub-01/ses-test/fmap/sub-01_ses-test_acq-singeband_ran-01_magnitude2.json", # wrong ssuffix ran -# "/sub-01/ses-test/fmap/sub-01_acq-singleband_run-01_magnitude2.nii", # missed session id in the filename -# "/sub-01/ses-test/fmap/ses-test_acq-singleband_run-01_fieldmap.nii.gz", # missed subject id in the filename -# "/sub-01/ses-test/fmap/sub-01_ses-test_acq-singleband_run-01.json", # missed modality -# "/sub-01/ses-test/fmap/sub-01_ses-test_acq-singleband_run-01_fieldmap", # wrong extension -# "/sub-01/fmap/ses-test/sub-01_ses-test_acq-singleband_dir-dirlabel_epi.nii.gz", # wrong dirs order -# "/ses-test/fmap/sub-01/sub-01_ses-test_acq-singleband_dir-dirlabel_epi.json", # wrong dirs order -# "/ses-test/sub-01/fmap/sub-01_ses-test_acq-singleband_dir-dirlabel_epi.nii", # wrong dirs order -# "/sub-01/ses-test/sub-01_ses-test_acq-singleband_dir-dirlabel_run-01_epi.nii.gz", # missed data type dir -# "/sub-01/fmap/sub-01_ses-test_acq-singleband_dir-dirlabel_run-01_epi.json", # missed session dir -# "/ses-test/fmap/sub-01_ses-test_acq-singleband_dir-dirlabel_run-01_epi.nii" # missed subject dir -# ] - -# for item in target_list: -# result = testvalidator.is_field_map(item) -# assert not result - - -# checks is_phenotypic() function true cases -def test_is_phenotypic_true(testvalidator): - target_list = [ - "/phenotype/measurement_tool_name.tsv", - "/phenotype/measurement_tool_name.json" - ] - - for item in target_list: - result = testvalidator.is_phenotypic(item) - assert result - - -# checks is_phenotypic() function true cases -def test_is_phenotypic_false(testvalidator): - target_list = [ - "/measurement_tool_name.tsv", # missed phenotype dir - "/phentype/measurement_tool_name.josn" # wrong phenotype dir - "/phenotype/measurement_tool_name.jsn" # wrong extension - ] - - for item in target_list: - result = testvalidator.is_phenotypic(item) - assert not result - - -def test_index_associated_false(testvalidator): - testvalidator = BIDSValidator(index_associated=False) - target_list = [ - "/code/", - "/derivatives/", - "/sourcedata/", - "/stimuli/", - "/.git/" - ] - - for item in target_list: - result = testvalidator.is_associated_data(item) - assert not result - def test_layout_with_validation(): data_dir = join(get_test_data_path(), '7t_trt') layout1 = BIDSLayout(data_dir, validate=True)