diff --git a/ibaqpy/ibaq/peptide_normalization.py b/ibaqpy/ibaq/peptide_normalization.py index 7deb98d..303b24b 100644 --- a/ibaqpy/ibaq/peptide_normalization.py +++ b/ibaqpy/ibaq/peptide_normalization.py @@ -143,7 +143,7 @@ def remove_contaminants_entrapments_decoys( """ contaminants = [] contaminants.append("CONTAMINANT") - contaminants.append("ENTRAPMENT") + contaminants.append("ENTRAP") contaminants.append("DECOY") cregex = "|".join(contaminants) return dataset[~dataset[protein_field].str.contains(cregex)] diff --git a/ibaqpy/ibaqpyc.py b/ibaqpy/ibaqpyc.py index 79c3f12..2fb3bbb 100644 --- a/ibaqpy/ibaqpyc.py +++ b/ibaqpy/ibaqpyc.py @@ -1,5 +1,4 @@ import click - from ibaqpy.commands.features2peptides import features2parquet from ibaqpy.commands.compute_tpa import tpa_compute from ibaqpy.commands.merge_condition_files import merge_condition_generation @@ -9,7 +8,6 @@ CONTEXT_SETTINGS = dict(help_option_names=["-h", "--help"]) - @click.group(context_settings=CONTEXT_SETTINGS) @click.version_option( version=__init__.__version__,