diff --git a/benchmarks/README.md b/benchmarks/README.md index 2ae0570..5c31d5a 100644 --- a/benchmarks/README.md +++ b/benchmarks/README.md @@ -102,6 +102,17 @@ The following boxplot shows the coefficient of variation for the 11 samples for +#### Correlation between Ibaq and MaxQuant(Ibaq) + +For `PXD007683-LFQ`, we will normalize the MaxQuant Ibaq values of the proteins by dividing it by the total sum of that sample. Then compare the correlation between the log values of it and the log values of IbaqNorm. + +
+ +
+
+ +
+ #### LFQ missing values Number of peptides missing in LFQ experiments. diff --git a/benchmarks/images/PXD007683-LFQ-11samples-ibaq-vs-maxquant-density.png b/benchmarks/images/PXD007683-LFQ-11samples-ibaq-vs-maxquant-density.png new file mode 100644 index 0000000..3d78469 Binary files /dev/null and b/benchmarks/images/PXD007683-LFQ-11samples-ibaq-vs-maxquant-density.png differ diff --git a/benchmarks/images/PXD007683-LFQ-ibaq-vs-maxquant-density.png b/benchmarks/images/PXD007683-LFQ-ibaq-vs-maxquant-density.png new file mode 100644 index 0000000..f53537a Binary files /dev/null and b/benchmarks/images/PXD007683-LFQ-ibaq-vs-maxquant-density.png differ