From e0043b230c9f1bfc3dd98f4d175cd583083e1ca8 Mon Sep 17 00:00:00 2001 From: zprobot <1727697083@qq.com> Date: Sun, 2 Jun 2024 21:51:57 +0800 Subject: [PATCH] update: benchmark --- benchmarks/README.md | 9 ++++++++- 1 file changed, 8 insertions(+), 1 deletion(-) diff --git a/benchmarks/README.md b/benchmarks/README.md index 6f02a07..aa1c8c9 100644 --- a/benchmarks/README.md +++ b/benchmarks/README.md @@ -176,4 +176,11 @@ We will normalize the MaxLFQ values of the proteins in the DIANN report by divid
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\ No newline at end of file + + +### Performance testing +The [PXD030304](https://ftp.pride.ebi.ac.uk/pub/databases/pride/resources/proteomes/absolute-expression/PXD030304/) project collected mass spectrometry data from 949 cancer cell lines and reanalyzed it using the DIANN analysis pipeline within the quantms platform.The size of the `diann_report.tsv` file is 167GB, after being converted to a parquet file using quantmsio, the size is 15.8GB.We conducted performance testing in a 128GB memory environment. + +| Project | Samples | Size(diann report) | Size(parquet file) | Runn time | +|--------|---------|----------|----------|----------| +| PXD030304 | 2013 | 167G | 15.8G | 2.75h |