From a9a3d45e77130eceab5126124bc2058f3d281133 Mon Sep 17 00:00:00 2001 From: Lev Levitsky Date: Tue, 8 Oct 2024 12:01:24 +0200 Subject: [PATCH] Fix ValueError on enzyme validation --- sdrf_pipelines/sdrf/sdrf_schema.py | 10 ++++++---- 1 file changed, 6 insertions(+), 4 deletions(-) diff --git a/sdrf_pipelines/sdrf/sdrf_schema.py b/sdrf_pipelines/sdrf/sdrf_schema.py index 9d85918..a467ca4 100644 --- a/sdrf_pipelines/sdrf/sdrf_schema.py +++ b/sdrf_pipelines/sdrf/sdrf_schema.py @@ -56,13 +56,15 @@ def ontology_term_parser(cell_value: str = None): term[TERM_NAME] = values[0].lower() else: for name in values: - value_terms = name.split("=") - if len(value_terms) == 2: - term[value_terms[0].strip().upper()] = value_terms[1].strip().lower() - else: + value_terms = name.split("=", 1) + if len(value_terms) == 1: + raise ValueError("Not a key-value pair: " + name) + if "=" in value_terms[1] and value_terms[0].lower() != 'cs': raise ValueError( f"Invalid term: {name} after splitting by '=', please check the prefix (e.g. AC, NT, " f"TA..)" ) + term[value_terms[0].strip().upper()] = value_terms[1].strip().lower() + return term