From 25542a03ccc22e733347fee04403020a2fd6b498 Mon Sep 17 00:00:00 2001
From: Dzmitry Hramyka <grom.dima.grom@gmail.com>
Date: Tue, 17 Sep 2024 11:52:13 +0200
Subject: [PATCH] Fix docker related CI workflows (#223)

---
 .dockerignore                                 | 17 -------
 ...{docker-build.yml.txt => docker-build.yml} |  2 +-
 ...eanup-pr.yml.txt => docker-cleanup-pr.yml} |  0
 ...ed.yml.txt => docker-cleanup-untagged.yml} |  0
 .github/workflows/release-please.yml          | 45 +++++++++++++++++++
 .gitignore                                    |  4 ++
 Dockerfile => utils/docker/Dockerfile         |  0
 7 files changed, 50 insertions(+), 18 deletions(-)
 rename .github/workflows/{docker-build.yml.txt => docker-build.yml} (97%)
 rename .github/workflows/{docker-cleanup-pr.yml.txt => docker-cleanup-pr.yml} (100%)
 rename .github/workflows/{docker-cleanup-untagged.yml.txt => docker-cleanup-untagged.yml} (100%)
 create mode 100644 .github/workflows/release-please.yml
 rename Dockerfile => utils/docker/Dockerfile (100%)

diff --git a/.dockerignore b/.dockerignore
index 349e2c3..398352c 100644
--- a/.dockerignore
+++ b/.dockerignore
@@ -2,9 +2,6 @@
 .ipynb_checkpoints
 .vscode
 .idea
-.git
-.gitignore
-.gitattributes
 .mypy_cache
 .pytest_cache
 __pycache__
@@ -15,25 +12,11 @@ cache/**
 src/bench/tmp/*.csv
 *.~lock.*
 .DS_Store
-*.json
-*.so
-*.log
-temp/
 tmp/
 docs/
 *.md
-dist/
 build/
-*.egg-info
-*.egg
-site/
 tests/
 *.pyc
 *.env
 src/bench/
-.coverage
-.readthedocs.yaml
-codecov.yml
-comparison.log
-coverage.lcov
-LICENSE
diff --git a/.github/workflows/docker-build.yml.txt b/.github/workflows/docker-build.yml
similarity index 97%
rename from .github/workflows/docker-build.yml.txt
rename to .github/workflows/docker-build.yml
index 04c93d8..99103fe 100644
--- a/.github/workflows/docker-build.yml.txt
+++ b/.github/workflows/docker-build.yml
@@ -14,7 +14,7 @@ name: Docker Build
 
 env:
   REGISTRY: ghcr.io
-  IMAGE_NAME: auto-acmg
+  IMAGE_NAME: ${{ github.repository }}
 
 jobs:
   Image-Build-Push:
diff --git a/.github/workflows/docker-cleanup-pr.yml.txt b/.github/workflows/docker-cleanup-pr.yml
similarity index 100%
rename from .github/workflows/docker-cleanup-pr.yml.txt
rename to .github/workflows/docker-cleanup-pr.yml
diff --git a/.github/workflows/docker-cleanup-untagged.yml.txt b/.github/workflows/docker-cleanup-untagged.yml
similarity index 100%
rename from .github/workflows/docker-cleanup-untagged.yml.txt
rename to .github/workflows/docker-cleanup-untagged.yml
diff --git a/.github/workflows/release-please.yml b/.github/workflows/release-please.yml
new file mode 100644
index 0000000..9ada3ae
--- /dev/null
+++ b/.github/workflows/release-please.yml
@@ -0,0 +1,45 @@
+name: Release
+
+on:
+  release:
+    types: [created]
+
+env:
+  REGISTRY: ghcr.io
+  IMAGE_NAME: ${{ github.repository }}
+
+jobs:
+
+  Container-Release:
+    runs-on: ubuntu-latest
+    steps:
+      - name: Checkout repository
+        uses: actions/checkout@v4
+        with:
+          lfs: 'true'
+          submodules: recursive
+
+      - name: Log in to the Container registry
+        uses: docker/login-action@v3
+        with:
+          registry: ${{ env.REGISTRY }}
+          username: ${{ github.actor }}
+          password: ${{ secrets.GITHUB_TOKEN }}
+
+      - name: Extract metadata (tags, labels) for Docker
+        id: meta
+        uses: docker/metadata-action@v5
+        with:
+          images: ${{ env.REGISTRY }}/${{ env.IMAGE_NAME }}
+          tags: |
+            type=raw,value=latest,enable={{is_default_branch}}
+            type=ref,event=branch
+
+      - name: Build and push Docker image
+        uses: docker/build-push-action@v6
+        with:
+          context: .
+          file: utils/docker/Dockerfile
+          tags: ${{ steps.meta.outputs.tags }}
+          labels: ${{ steps.meta.outputs.labels }}
+          push: true
diff --git a/.gitignore b/.gitignore
index f1d529a..e73fa36 100644
--- a/.gitignore
+++ b/.gitignore
@@ -14,6 +14,10 @@ cache/**
 # Prediction file
 prediction.json
 
+# Seqrepo archives
+seqrepo.tar.gz
+seqrepo_master.tar.gz
+
 # DS_Store file
 .DS_Store
 
diff --git a/Dockerfile b/utils/docker/Dockerfile
similarity index 100%
rename from Dockerfile
rename to utils/docker/Dockerfile