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biotools.xsd
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biotools.xsd
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<?xml version="1.0" encoding="UTF-8"?>
<!-- edited with XMLSpy v2018 rel. 2 sp1 (x64) (http://www.altova.com) by Jon Ison (private) -->
<!-- edited at GitHub (https://github.com) by Matus Kalas -->
<xs:schema xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:altova="http://www.altova.com/xml-schema-extensions" xmlns="biotoolsSchema" targetNamespace="biotoolsSchema" elementFormDefault="qualified" attributeFormDefault="unqualified">
<xs:element name="tools">
<xs:annotation>
<xs:documentation>Description of one or more bioinformatics tools - application software with well-defined data processing functions (inputs, outputs and operations). This includes simple tools with one or a few closely related functions, and complex, multimodal tools with many functions. Tools may be available available for immediate use as online services, or in a form which which you can download, install, configure and run yourself.</xs:documentation>
</xs:annotation>
<xs:complexType>
<xs:sequence>
<xs:element ref="tool" maxOccurs="unbounded">
<xs:annotation>
<xs:documentation>Description of a bioinformatics software tool - a software application with well-defined data processing functions (inputs, outputs and operations). A tool is a discrete, but possibly complex software entity.</xs:documentation>
</xs:annotation>
</xs:element>
</xs:sequence>
</xs:complexType>
</xs:element>
<xs:complexType name="linkType">
<xs:annotation>
<xs:documentation>HTML link.</xs:documentation>
</xs:annotation>
<xs:sequence>
<xs:element name="url" type="urlftpType">
<xs:annotation>
<xs:documentation>A link of some relevance to the software (URL).</xs:documentation>
</xs:annotation>
</xs:element>
<xs:element name="type" type="enumType" maxOccurs="unbounded">
<xs:annotation>
<xs:documentation>The type of data or information that is obtained when the link is resolved.</xs:documentation>
</xs:annotation>
</xs:element>
<xs:element name="note" type="textType" minOccurs="0">
<xs:annotation>
<xs:documentation>Comment about the link.</xs:documentation>
<xs:appinfo>
<uiTip>Comment about the link.</uiTip>
</xs:appinfo>
</xs:annotation>
</xs:element>
</xs:sequence>
</xs:complexType>
<xs:element name="tool">
<xs:annotation>
<xs:documentation>Attributes of a bioinformatics tool.</xs:documentation>
</xs:annotation>
<xs:complexType>
<xs:sequence>
<xs:element name="name" type="nameType">
<xs:annotation>
<xs:documentation>Canonical software name assigned by the software developer or service provider.</xs:documentation>
<xs:appinfo>
<uiTip>Software name.</uiTip>
</xs:appinfo>
<xs:appinfo>
<altova:exampleValues>
<altova:example value="needle"/>
</altova:exampleValues>
</xs:appinfo>
</xs:annotation>
</xs:element>
<xs:element name="description">
<xs:annotation>
<xs:documentation>Textual description of the software.</xs:documentation>
<xs:documentation>This can be a few sentences copy-pasted from the software homepage.</xs:documentation>
<xs:appinfo>
<uiTip>Software description, e.g. a few sentences adapted from the software publication abstract or homepage.</uiTip>
</xs:appinfo>
<xs:appinfo>
<altova:exampleValues>
<altova:example value="needle reads two input sequences and writes their optimal global sequence alignment to file. It uses the Needleman-Wunsch alignment algorithm to find the optimum alignment (including gaps) of two sequences along their entire length. The algorithm uses a dynamic programming method to ensure the alignment is optimum, by exploring all possible alignments and choosing the best."/>
</altova:exampleValues>
</xs:appinfo>
</xs:annotation>
<xs:simpleType>
<xs:restriction base="textType">
<xs:maxLength value="1000"/>
</xs:restriction>
</xs:simpleType>
</xs:element>
<xs:element name="homepage" type="urlftpType">
<xs:annotation>
<xs:documentation>Homepage of the software, or some URL that best serves this purpose.</xs:documentation>
<xs:appinfo>
<uiTip>Homepage of the software, or some URL that best serves this purpose.</uiTip>
</xs:appinfo>
<xs:appinfo>
<altova:exampleValues>
<altova:example value="http://emboss.open-bio.org/rel/rel6/apps/needle.html"/>
</altova:exampleValues>
</xs:appinfo>
</xs:annotation>
</xs:element>
<xs:element name="biotoolsID" type="biotoolsIdType" minOccurs="0">
<xs:annotation>
<xs:documentation>Unique ID (case insensitive) of the tool that is assigned upon registration of the software in bio.tools, normally identical to tool name.</xs:documentation>
<xs:appinfo>
<uiTip>Unique ID of the tool that is assigned upon registration of the software in bio.tools.</uiTip>
</xs:appinfo>
<xs:documentation>bio.tools IDs are set by bio.tools admin and will be disregarded if specified in a payload (e.g. PUSH, POST) to the bio.tools API.</xs:documentation>
</xs:annotation>
</xs:element>
<xs:element name="biotoolsCURIE" minOccurs="0">
<xs:annotation>
<xs:documentation>bio.tools CURIE (compact URI) based on the bio.tools tool ID.</xs:documentation>
<xs:documentation>The bio.tools CURIE is simply the bio.tools tool ID with the prefix "biotools:".</xs:documentation>
<xs:appinfo>
<uiTip>bio.tools CURIE (compact URI) based on the bio.tools tool ID.</uiTip>
</xs:appinfo>
<xs:appinfo>
<altova:exampleValues>
<altova:example value="biotools:signalp"/>
</altova:exampleValues>
</xs:appinfo>
<xs:documentation>bio.tools CURIEs are set by bio.tools admin and will be disregarded if specified in a payload (e.g. PUSH, POST) to the bio.tools API.</xs:documentation>
</xs:annotation>
<xs:simpleType>
<xs:restriction base="xs:anyURI">
<xs:pattern value="biotools:[_\-.0-9a-zA-Z]*"/>
</xs:restriction>
</xs:simpleType>
</xs:element>
<xs:element name="version" minOccurs="0" maxOccurs="unbounded">
<xs:annotation>
<xs:documentation>Version information (typically a version number) of the software applicable to this bio.tools entry.</xs:documentation>
<xs:appinfo>
<uiTip>Version information (typically a version number) of the software applicable to this bio.tools entry.</uiTip>
</xs:appinfo>
</xs:annotation>
<xs:simpleType>
<xs:restriction base="versionType"/>
</xs:simpleType>
</xs:element>
<xs:element name="otherID" minOccurs="0" maxOccurs="unbounded">
<xs:annotation>
<xs:documentation>A unique identifier of the software, typically assigned by an ID-assignment authority other than bio.tools.</xs:documentation>
<xs:appinfo>
<uiTip>Unique identifier of the software not (typically) assigned by bio.tools.</uiTip>
</xs:appinfo>
<xs:documentation>This field is not normally used for bio.tools toolIDs, but could be in the exceptional case that multiple such IDs were needed for a given entry.</xs:documentation>
</xs:annotation>
<xs:complexType>
<xs:sequence>
<xs:element name="value">
<xs:annotation>
<xs:documentation>Value of tool identifier.</xs:documentation>
<xs:appinfo>
<altova:exampleValues>
<altova:example value="10.1038/nmeth.1701"/>
<altova:example value="RRID:SCR_001156"/>
<altova:example value="cpe:2.3:a:microsoft:internet_explorer:8.0.6001:beta:*:*:*:*:*:*"/>
<altova:example value="biotools:signalp"/>
</altova:exampleValues>
</xs:appinfo>
<xs:appinfo>
<uiTip>Value of tool identifier.</uiTip>
</xs:appinfo>
</xs:annotation>
<xs:simpleType>
<xs:restriction base="xs:token">
<xs:pattern value="10\.[0-9]{4,9}/[\[\]<>A-Za-z0-9:;\)\(_/.-]+"/>
<xs:pattern value="(rrid|RRID):.+"/>
<xs:pattern value="(cpe|CPE):.+"/>
<xs:pattern value="(BIOTOOLS|biotools):[_\-.0-9a-zA-Z]*"/>
</xs:restriction>
</xs:simpleType>
</xs:element>
<xs:element name="type" minOccurs="0">
<xs:annotation>
<xs:documentation>Type of tool identifier.</xs:documentation>
<xs:appinfo>
<uiTip>Type of tool identifier.</uiTip>
<enum>
<enumItem>
<term>doi</term>
<uiTip>Digital Object Identifier of the software assigned (typically) by the software developer or service provider.</uiTip>
</enumItem>
<enumItem>
<term>rrid</term>
<uiTip>Research Resource Identifier as used by the NIH-supported Resource Identification Portal (https://scicrunch.org/resources).</uiTip>
</enumItem>
<enumItem>
<term>cpe</term>
<uiTip>Common Platform Enumeration (CPE) identifier as listed in the CPE dictionary (https://cpe.mitre.org/dictionary/).</uiTip>
</enumItem>
<enumItem>
<term>biotoolsCURIE</term>
<uiTip>bio.tools CURIE (secondary identifier).</uiTip>
</enumItem>
</enum>
</xs:appinfo>
<xs:appinfo>
<altova:exampleValues>
<altova:example value="doi"/>
<altova:example value="rrid"/>
<altova:example value="cpe"/>
<altova:example value="biotoolsCURIE"/>
</altova:exampleValues>
</xs:appinfo>
</xs:annotation>
<xs:simpleType>
<xs:restriction base="enumType">
<xs:enumeration value="doi"/>
<xs:enumeration value="rrid"/>
<xs:enumeration value="cpe"/>
<xs:enumeration value="biotoolsCURIE"/>
</xs:restriction>
</xs:simpleType>
</xs:element>
<xs:element name="version" minOccurs="0">
<xs:annotation>
<xs:documentation>Version information (typically a version number) of the software applicable to this identifier.</xs:documentation>
<xs:appinfo>
<uiTip>Software version number.</uiTip>
</xs:appinfo>
</xs:annotation>
<xs:simpleType>
<xs:restriction base="versionType"/>
</xs:simpleType>
</xs:element>
</xs:sequence>
</xs:complexType>
</xs:element>
<xs:element name="toolType" minOccurs="0" maxOccurs="unbounded">
<xs:annotation>
<xs:documentation>A type of application software: a discrete software entity can have more than one type.</xs:documentation>
<xs:documentation>bio.tools includes all types of bioinformatics tools: application software with well-defined data processing functions (inputs, outputs and operations). When registering a tool, one or more tool types may be assigned, reflecting the different facets of the software being described.</xs:documentation>
<xs:appinfo>
<uiTip>Type of application software. A tool may have more than one type.</uiTip>
>
<enum>
<enumItem>
<term>Bioinformatics portal</term>
<uiTip>A web site providing a platform/portal to multiple resources used for research in a focused area, including biological databases, web applications, training resources and so on.</uiTip>
</enumItem>
<enumItem>
<term>Command-line tool</term>
<uiTip>A tool with a text-based (command-line) interface.</uiTip>
</enumItem>
<enumItem>
<term>Database portal</term>
<uiTip>A Web site providing a portal to a biological database, typically allowing a user to browse, deposit, search, visualise, analyse or download data.</uiTip>
</enumItem>
<enumItem>
<term>Desktop application</term>
<uiTip>A tool with a graphical user interface that runs on your desktop environment, e.g. on a PC or mobile device.</uiTip>
</enumItem>
<enumItem>
<term>Library</term>
<uiTip>A collection of components that are used to construct other tools. bio.tools scope includes component libraries performing high-level bioinformatics functions but excludes lower-level programming libraries.</uiTip>
</enumItem>
<enumItem>
<term>Ontology</term>
<uiTip>A collection of information about concepts, including terms, synonyms, descriptions etc.</uiTip>
</enumItem>
<enumItem>
<term>Plug-in</term>
<uiTip>A software component encapsulating a set of related functions, which are not standalone but depend upon (and typically extend the function of) other software for its use, e.g. a JavaScript widget, plug-in, extension or add-on.</uiTip>
</enumItem>
<enumItem>
<term>Script</term>
<uiTip>A tool written for some run-time environment (e.g. other applications or an OS shell) that automates the execution of tasks. Often a small program written in a general-purpose languages (e.g. Perl, Python) or some domain-specific languages (e.g. sed).</uiTip>
</enumItem>
<enumItem>
<term>SPARQL endpoint</term>
<uiTip>A service that provides queries over an RDF knowledge base via the SPARQL query language and protocol, and returns results via HTTP.</uiTip>
</enumItem>
<enumItem>
<term>Suite</term>
<uiTip>A collection of tools which are bundled together into a convenient toolkit. Such tools typically share related functionality, a common user interface and can exchange data conveniently. This includes collections of stand-alone command-line tools, or Web applications within a common portal.</uiTip>
</enumItem>
<enumItem>
<term>Web application</term>
<uiTip>A tool with a graphical user interface that runs in your Web browser.</uiTip>
</enumItem>
<enumItem>
<term>Web API</term>
<uiTip>An application programming interface (API) consisting of endpoints to a request-response message system accessible via HTTP. Includes everything from simple data-access URLs to RESTful APIs.</uiTip>
</enumItem>
<enumItem>
<term>Web service</term>
<uiTip>An API described in a machine readable form (typically WSDL) providing programmatic access via SOAP over HTTP.</uiTip>
</enumItem>
<enumItem>
<term>Workbench</term>
<uiTip>An application or suite with a graphical user interface, providing an integrated environment for data analysis which includes or may be extended with any number of functions or tools. Includes workflow systems, platforms, frameworks etc.</uiTip>
</enumItem>
<enumItem>
<term>Workflow</term>
<uiTip>A set of tools which have been composed together into a pipeline of some sort. Such tools are (typically) standalone, but are composed for convenience, for instance for batch execution via some workflow engine or script.</uiTip>
</enumItem>
</enum>
</xs:appinfo>
</xs:annotation>
<xs:simpleType>
<xs:restriction base="enumType">
<xs:enumeration value="Bioinformatics portal"/>
<xs:enumeration value="Command-line tool"/>
<xs:enumeration value="Database portal"/>
<xs:enumeration value="Desktop application"/>
<xs:enumeration value="Library"/>
<xs:enumeration value="Ontology"/>
<xs:enumeration value="Plug-in"/>
<xs:enumeration value="Script"/>
<xs:enumeration value="SPARQL endpoint"/>
<xs:enumeration value="Suite"/>
<xs:enumeration value="Web application"/>
<xs:enumeration value="Web API"/>
<xs:enumeration value="Web service"/>
<xs:enumeration value="Workbench"/>
<xs:enumeration value="Workflow"/>
</xs:restriction>
</xs:simpleType>
</xs:element>
<xs:element name="topic" minOccurs="0" maxOccurs="unbounded">
<xs:annotation>
<xs:documentation>General scientific domain the software serves or other general category (EDAM Topic).</xs:documentation>
<xs:documentation>An EDAM Topic concept URL and / or term are specified, e.g. "Proteomics", http://edamontology.org/topic_0121.</xs:documentation>
<xs:appinfo>
<uiTip>Scientific topic (EDAM Topic).</uiTip>
>
</xs:appinfo>
</xs:annotation>
<xs:complexType>
<xs:complexContent>
<xs:restriction base="ontologyConcept">
<xs:choice>
<xs:sequence>
<xs:element name="uri">
<xs:annotation>
<xs:documentation>URL of an EDAM Topic concept.</xs:documentation>
<xs:appinfo>
<uiTip>EDAM Topic URL.</uiTip>
>
</xs:appinfo>
<xs:documentation>The URL must be in the EDAM Topic namespace, i.e. http://edamontology.org/topic_.</xs:documentation>
<xs:appinfo>
<altova:exampleValues>
<altova:example value="http://edamontology.org/topic_0121"/>
</altova:exampleValues>
</xs:appinfo>
</xs:annotation>
<xs:simpleType>
<xs:restriction base="xs:anyURI">
<xs:pattern value="http://edamontology\.org/topic_[0-9]{4}"/>
</xs:restriction>
</xs:simpleType>
</xs:element>
<xs:element name="term" type="xs:token" minOccurs="0">
<xs:annotation>
<xs:documentation>An EDAM Topic term (preferred label or synonym).</xs:documentation>
<xs:documentation>The term must be either the preferred label of the concept or a synonym of this term, as defined in EDAM.</xs:documentation>
<xs:appinfo>
<uiTip>EDAM Topic term (preferred label or synonym).</uiTip>
>
</xs:appinfo>
<xs:appinfo>
<altova:exampleValues>
<altova:example value="Proteomics"/>
</altova:exampleValues>
</xs:appinfo>
</xs:annotation>
</xs:element>
</xs:sequence>
<xs:element name="term" type="xs:token"/>
</xs:choice>
</xs:restriction>
</xs:complexContent>
</xs:complexType>
</xs:element>
<xs:element name="operatingSystem" minOccurs="0" maxOccurs="unbounded">
<xs:annotation>
<xs:documentation>The operating system supported by a downloadable software.</xs:documentation>
<xs:appinfo>
<uiTip>Operating system supported by a downloadable software package.</uiTip>
<enum>
<enumItem>
<term>Linux</term>
<uiTip>All flavours of Linux/UNIX operating systems.</uiTip>
</enumItem>
<enumItem>
<term>Windows</term>
<uiTip>All flavours of Microsoft Windows operating system.</uiTip>
</enumItem>
<enumItem>
<term>Mac</term>
<uiTip>All flavours of Apple Macintosh operating systems (primarily Mac OS X).</uiTip>
</enumItem>
</enum>
</xs:appinfo>
</xs:annotation>
<xs:simpleType>
<xs:restriction base="enumType">
<xs:enumeration value="Linux"/>
<xs:enumeration value="Windows"/>
<xs:enumeration value="Mac"/>
</xs:restriction>
</xs:simpleType>
</xs:element>
<xs:element name="language" minOccurs="0" maxOccurs="unbounded">
<xs:annotation>
<xs:documentation>Name of programming language, e.g. used for the software source code or compatible with an API.</xs:documentation>
<xs:appinfo>
<uiTip>Source code language.</uiTip>
</xs:appinfo>
</xs:annotation>
<xs:simpleType>
<xs:restriction base="enumType">
<xs:enumeration value="ActionScript"/>
<xs:enumeration value="Ada"/>
<xs:enumeration value="AppleScript"/>
<xs:enumeration value="Assembly language"/>
<xs:enumeration value="AWK"/>
<xs:enumeration value="Bash"/>
<xs:enumeration value="C"/>
<xs:enumeration value="C#"/>
<xs:enumeration value="C++"/>
<xs:enumeration value="Clojure"/>
<xs:enumeration value="COBOL"/>
<xs:enumeration value="ColdFusion"/>
<xs:enumeration value="CUDA"/>
<xs:enumeration value="CWL"/>
<xs:enumeration value="D"/>
<xs:enumeration value="Delphi"/>
<xs:enumeration value="Dylan"/>
<xs:enumeration value="Eiffel"/>
<xs:enumeration value="Elm"/>
<xs:enumeration value="Forth"/>
<xs:enumeration value="Fortran"/>
<xs:enumeration value="Groovy"/>
<xs:enumeration value="Haskell"/>
<xs:enumeration value="Icarus"/>
<xs:enumeration value="Java"/>
<xs:enumeration value="JavaScript"/>
<xs:enumeration value="Julia"/>
<xs:enumeration value="JSP"/>
<xs:enumeration value="LabVIEW"/>
<xs:enumeration value="Lisp"/>
<xs:enumeration value="Lua"/>
<xs:enumeration value="Maple"/>
<xs:enumeration value="Mathematica"/>
<xs:enumeration value="MATLAB"/>
<xs:enumeration value="MLXTRAN"/>
<xs:enumeration value="NMTRAN"/>
<xs:enumeration value="OCaml"/>
<xs:enumeration value="Pascal"/>
<xs:enumeration value="Perl"/>
<xs:enumeration value="PHP"/>
<xs:enumeration value="Prolog"/>
<xs:enumeration value="PyMOL"/>
<xs:enumeration value="Python"/>
<xs:enumeration value="R"/>
<xs:enumeration value="Racket"/>
<xs:enumeration value="REXX"/>
<xs:enumeration value="Ruby"/>
<xs:enumeration value="SAS"/>
<xs:enumeration value="Scala"/>
<xs:enumeration value="Scheme"/>
<xs:enumeration value="Shell"/>
<xs:enumeration value="Smalltalk"/>
<xs:enumeration value="SQL"/>
<xs:enumeration value="Turing"/>
<xs:enumeration value="Verilog"/>
<xs:enumeration value="VHDL"/>
<xs:enumeration value="Visual Basic"/>
<xs:enumeration value="XAML"/>
<xs:enumeration value="Other"/>
</xs:restriction>
</xs:simpleType>
</xs:element>
<xs:element name="license" minOccurs="0">
<xs:annotation>
<xs:documentation>Software or data usage license.</xs:documentation>
<xs:appinfo>
<uiTip>Software or data usage license. For online services, this refers to the license of the underlying software or data.</uiTip>
</xs:appinfo>
<xs:documentation>Identifier from the SPDX license list (https://spdx.org/licenses/). In future, based on the supplied license, a label e.g. "Open-source" may be applied to the entry in bio.tools.</xs:documentation>
<xs:appinfo>
<enum>
<enumItem>
<term>Open-source</term>
<uiTip>Software is made available under a license approved by the Open Source Initiative (OSI). The software is distributed in a way that satisfies the 10 criteria of the Open Source Definition maintained by OSI (see https://opensource.org/docs/osd). The source code is available to others.</uiTip>
</enumItem>
<enumItem>
<term>Free software</term>
<uiTip>Free as in “freedom” not necessarily free of charge. Software is made available under a license approved by the Free Software Foundation (FSF). The software satisfies the criteria of the Free Software Definition maintained by FSF (see http://www.gnu.org/philosophy/free-sw.html). The source code is available to others.</uiTip>
</enumItem>
<enumItem>
<term>Free and open source</term>
<uiTip>Software is made available under a license approved by both the Open Source Initiative (OSI) and the Free Software Foundation (FSF), and satisfies the criteria of the OSI Open Source Definition maintained (https://opensource.org/docs/osd) and the FSF Free Software Definition (http://www.gnu.org/philosophy/free-sw.html). Such software ensures users have the freedom to run, copy, distribute, study, change and improve the software. The source code is available to others.</uiTip>
</enumItem>
<enumItem>
<term>Copyleft</term>
<uiTip>Software is made available under a license designated as “copyleft” by the Free Software Foundation (FSF). The license ensures such software is free and that all modified and extended versions of the program are free as well. Free as in “freedom” not necessarily free of charge, as per the Free Software Definition maintained by FSF (see http://www.gnu.org/philosophy/free-sw.html).</uiTip>
</enumItem>
<enumItem>
<term>Proprietary</term>
<uiTip>Software for which the software's publisher or another person retains intellectual property rights—usually copyright of the source code, but sometimes patent rights.</uiTip>
</enumItem>
</enum>
<enumItem>
<term>Freeware</term>
<uiTip>Proprietary software that is available for use at no monetary cost. In other words, freeware may be used without payment but may usually not be modified, re-distributed or reverse-engineered without the author's permission.</uiTip>
</enumItem>
<enumItem>
<term>Not licensed</term>
<uiTip>Software which is not licensed and is not proprietary.</uiTip>
</enumItem>
<enumItem>
<term>Other</term>
<uiTip>Software under license not currently supported by biotoolsSchema.</uiTip>
</enumItem>
</xs:appinfo>
<xs:documentation>Use "Proprietary" where the software must be obtained from the provider (e.g. for money), and is then owned. Use "Freeware" for proprietary software that is available at no monetary cost. Use "Not licensed" for software which is not licensed and is not proprietary, and "Other" for software under license not currently supported by biotoolsSchema.</xs:documentation>
<xs:documentation>Note that for online services, the license attribute refers to the license of the underlying software or data, or a part of those.</xs:documentation>
</xs:annotation>
<xs:simpleType>
<xs:restriction base="enumType">
<xs:enumeration value="0BSD"/>
<xs:enumeration value="AAL"/>
<xs:enumeration value="ADSL"/>
<xs:enumeration value="AFL-1.1"/>
<xs:enumeration value="AFL-1.2"/>
<xs:enumeration value="AFL-2.0"/>
<xs:enumeration value="AFL-2.1"/>
<xs:enumeration value="AFL-3.0"/>
<xs:enumeration value="AGPL-1.0"/>
<xs:enumeration value="AGPL-3.0"/>
<xs:enumeration value="AMDPLPA"/>
<xs:enumeration value="AML"/>
<xs:enumeration value="AMPAS"/>
<xs:enumeration value="ANTLR-PD"/>
<xs:enumeration value="APAFML"/>
<xs:enumeration value="APL-1.0"/>
<xs:enumeration value="APSL-1.0"/>
<xs:enumeration value="APSL-1.1"/>
<xs:enumeration value="APSL-1.2"/>
<xs:enumeration value="APSL-2.0"/>
<xs:enumeration value="Abstyles"/>
<xs:enumeration value="Adobe-2006"/>
<xs:enumeration value="Adobe-Glyph"/>
<xs:enumeration value="Afmparse"/>
<xs:enumeration value="Aladdin"/>
<xs:enumeration value="Apache-1.0"/>
<xs:enumeration value="Apache-1.1"/>
<xs:enumeration value="Apache-2.0"/>
<xs:enumeration value="Artistic-1.0"/>
<xs:enumeration value="Artistic-1.0-Perl"/>
<xs:enumeration value="Artistic-1.0-cl8"/>
<xs:enumeration value="Artistic-2.0"/>
<xs:enumeration value="BSD-2-Clause"/>
<xs:enumeration value="BSD-2-Clause-FreeBSD"/>
<xs:enumeration value="BSD-2-Clause-NetBSD"/>
<xs:enumeration value="BSD-3-Clause"/>
<xs:enumeration value="BSD-3-Clause-Attribution"/>
<xs:enumeration value="BSD-3-Clause-Clear"/>
<xs:enumeration value="BSD-3-Clause-LBNL"/>
<xs:enumeration value="BSD-3-Clause-No-Nuclear-License"/>
<xs:enumeration value="BSD-3-Clause-No-Nuclear-License-2014"/>
<xs:enumeration value="BSD-3-Clause-No-Nuclear-Warranty"/>
<xs:enumeration value="BSD-4-Clause"/>
<xs:enumeration value="BSD-4-Clause-UC"/>
<xs:enumeration value="BSD-Protection"/>
<xs:enumeration value="BSD-Source-Code"/>
<xs:enumeration value="BSL-1.0"/>
<xs:enumeration value="Bahyph"/>
<xs:enumeration value="Barr"/>
<xs:enumeration value="Beerware"/>
<xs:enumeration value="BitTorrent-1.0"/>
<xs:enumeration value="BitTorrent-1.1"/>
<xs:enumeration value="Borceux"/>
<xs:enumeration value="CATOSL-1.1"/>
<xs:enumeration value="CC-BY-1.0"/>
<xs:enumeration value="CC-BY-2.0"/>
<xs:enumeration value="CC-BY-2.5"/>
<xs:enumeration value="CC-BY-3.0"/>
<xs:enumeration value="CC-BY-4.0"/>
<xs:enumeration value="CC-BY-NC-1.0"/>
<xs:enumeration value="CC-BY-NC-2.0"/>
<xs:enumeration value="CC-BY-NC-2.5"/>
<xs:enumeration value="CC-BY-NC-3.0"/>
<xs:enumeration value="CC-BY-NC-4.0"/>
<xs:enumeration value="CC-BY-NC-ND-1.0"/>
<xs:enumeration value="CC-BY-NC-ND-2.0"/>
<xs:enumeration value="CC-BY-NC-ND-2.5"/>
<xs:enumeration value="CC-BY-NC-ND-3.0"/>
<xs:enumeration value="CC-BY-NC-ND-4.0"/>
<xs:enumeration value="CC-BY-NC-SA-1.0"/>
<xs:enumeration value="CC-BY-NC-SA-2.0"/>
<xs:enumeration value="CC-BY-NC-SA-2.5"/>
<xs:enumeration value="CC-BY-NC-SA-3.0"/>
<xs:enumeration value="CC-BY-NC-SA-4.0"/>
<xs:enumeration value="CC-BY-ND-1.0"/>
<xs:enumeration value="CC-BY-ND-2.0"/>
<xs:enumeration value="CC-BY-ND-2.5"/>
<xs:enumeration value="CC-BY-ND-3.0"/>
<xs:enumeration value="CC-BY-ND-4.0"/>
<xs:enumeration value="CC-BY-SA-1.0"/>
<xs:enumeration value="CC-BY-SA-2.0"/>
<xs:enumeration value="CC-BY-SA-2.5"/>
<xs:enumeration value="CC-BY-SA-3.0"/>
<xs:enumeration value="CC-BY-SA-4.0"/>
<xs:enumeration value="CC0-1.0"/>
<xs:enumeration value="CDDL-1.0"/>
<xs:enumeration value="CDDL-1.1"/>
<xs:enumeration value="CECILL-1.0"/>
<xs:enumeration value="CECILL-1.1"/>
<xs:enumeration value="CECILL-2.0"/>
<xs:enumeration value="CECILL-2.1"/>
<xs:enumeration value="CECILL-B"/>
<xs:enumeration value="CECILL-C"/>
<xs:enumeration value="CNRI-Jython"/>
<xs:enumeration value="CNRI-Python"/>
<xs:enumeration value="CNRI-Python-GPL-Compatible"/>
<xs:enumeration value="CPAL-1.0"/>
<xs:enumeration value="CPL-1.0"/>
<xs:enumeration value="CPOL-1.02"/>
<xs:enumeration value="CUA-OPL-1.0"/>
<xs:enumeration value="Caldera"/>
<xs:enumeration value="ClArtistic"/>
<xs:enumeration value="Condor-1.1"/>
<xs:enumeration value="Crossword"/>
<xs:enumeration value="CrystalStacker"/>
<xs:enumeration value="Cube"/>
<xs:enumeration value="D-FSL-1.0"/>
<xs:enumeration value="DOC"/>
<xs:enumeration value="DSDP"/>
<xs:enumeration value="Dotseqn"/>
<xs:enumeration value="ECL-1.0"/>
<xs:enumeration value="ECL-2.0"/>
<xs:enumeration value="EFL-1.0"/>
<xs:enumeration value="EFL-2.0"/>
<xs:enumeration value="EPL-1.0"/>
<xs:enumeration value="EPL-2.0"/>
<xs:enumeration value="EUDatagrid"/>
<xs:enumeration value="EUPL-1.0"/>
<xs:enumeration value="EUPL-1.1"/>
<xs:enumeration value="Entessa"/>
<xs:enumeration value="ErlPL-1.1"/>
<xs:enumeration value="Eurosym"/>
<xs:enumeration value="FSFAP"/>
<xs:enumeration value="FSFUL"/>
<xs:enumeration value="FSFULLR"/>
<xs:enumeration value="FTL"/>
<xs:enumeration value="Fair"/>
<xs:enumeration value="Frameworx-1.0"/>
<xs:enumeration value="FreeImage"/>
<xs:enumeration value="GFDL-1.1"/>
<xs:enumeration value="GFDL-1.2"/>
<xs:enumeration value="GFDL-1.3"/>
<xs:enumeration value="GL2PS"/>
<xs:enumeration value="GPL-1.0"/>
<xs:enumeration value="GPL-2.0"/>
<xs:enumeration value="GPL-3.0"/>
<xs:enumeration value="Giftware"/>
<xs:enumeration value="Glide"/>
<xs:enumeration value="Glulxe"/>
<xs:enumeration value="HPND"/>
<xs:enumeration value="HaskellReport"/>
<xs:enumeration value="IBM-pibs"/>
<xs:enumeration value="ICU"/>
<xs:enumeration value="IJG"/>
<xs:enumeration value="IPA"/>
<xs:enumeration value="IPL-1.0"/>
<xs:enumeration value="ISC"/>
<xs:enumeration value="ImageMagick"/>
<xs:enumeration value="Imlib2"/>
<xs:enumeration value="Info-ZIP"/>
<xs:enumeration value="Intel"/>
<xs:enumeration value="Intel-ACPI"/>
<xs:enumeration value="Interbase-1.0"/>
<xs:enumeration value="JSON"/>
<xs:enumeration value="JasPer-2.0"/>
<xs:enumeration value="LAL-1.2"/>
<xs:enumeration value="LAL-1.3"/>
<xs:enumeration value="LGPL-2.0"/>
<xs:enumeration value="LGPL-2.1"/>
<xs:enumeration value="LGPL-3.0"/>
<xs:enumeration value="LGPLLR"/>
<xs:enumeration value="LPL-1.0"/>
<xs:enumeration value="LPL-1.02"/>
<xs:enumeration value="LPPL-1.0"/>
<xs:enumeration value="LPPL-1.1"/>
<xs:enumeration value="LPPL-1.2"/>
<xs:enumeration value="LPPL-1.3a"/>
<xs:enumeration value="LPPL-1.3c"/>
<xs:enumeration value="Latex2e"/>
<xs:enumeration value="Leptonica"/>
<xs:enumeration value="LiLiQ-P-1.1"/>
<xs:enumeration value="LiLiQ-R-1.1"/>
<xs:enumeration value="LiLiQ-Rplus-1.1"/>
<xs:enumeration value="Libpng"/>
<xs:enumeration value="MIT"/>
<xs:enumeration value="MIT-CMU"/>
<xs:enumeration value="MIT-advertising"/>
<xs:enumeration value="MIT-enna"/>
<xs:enumeration value="MIT-feh"/>
<xs:enumeration value="MITNFA"/>
<xs:enumeration value="MPL-1.0"/>
<xs:enumeration value="MPL-1.1"/>
<xs:enumeration value="MPL-2.0"/>
<xs:enumeration value="MPL-2.0-no-copyleft-exception"/>
<xs:enumeration value="MS-PL"/>
<xs:enumeration value="MS-RL"/>
<xs:enumeration value="MTLL"/>
<xs:enumeration value="MakeIndex"/>
<xs:enumeration value="MirOS"/>
<xs:enumeration value="Motosoto"/>
<xs:enumeration value="Multics"/>
<xs:enumeration value="Mup"/>
<xs:enumeration value="NASA-1.3"/>
<xs:enumeration value="NBPL-1.0"/>
<xs:enumeration value="NCSA"/>
<xs:enumeration value="NGPL"/>
<xs:enumeration value="NLOD-1.0"/>
<xs:enumeration value="NLPL"/>
<xs:enumeration value="NOSL"/>
<xs:enumeration value="NPL-1.0"/>
<xs:enumeration value="NPL-1.1"/>
<xs:enumeration value="NPOSL-3.0"/>
<xs:enumeration value="NRL"/>
<xs:enumeration value="NTP"/>
<xs:enumeration value="Naumen"/>
<xs:enumeration value="NetCDF"/>
<xs:enumeration value="Newsletr"/>
<xs:enumeration value="Nokia"/>
<xs:enumeration value="Noweb"/>
<xs:enumeration value="Nunit"/>
<xs:enumeration value="OCCT-PL"/>
<xs:enumeration value="OCLC-2.0"/>
<xs:enumeration value="ODbL-1.0"/>
<xs:enumeration value="OFL-1.0"/>
<xs:enumeration value="OFL-1.1"/>
<xs:enumeration value="OGTSL"/>
<xs:enumeration value="OLDAP-1.1"/>
<xs:enumeration value="OLDAP-1.2"/>
<xs:enumeration value="OLDAP-1.3"/>
<xs:enumeration value="OLDAP-1.4"/>
<xs:enumeration value="OLDAP-2.0"/>
<xs:enumeration value="OLDAP-2.0.1"/>
<xs:enumeration value="OLDAP-2.1"/>
<xs:enumeration value="OLDAP-2.2"/>
<xs:enumeration value="OLDAP-2.2.1"/>
<xs:enumeration value="OLDAP-2.2.2"/>
<xs:enumeration value="OLDAP-2.3"/>
<xs:enumeration value="OLDAP-2.4"/>
<xs:enumeration value="OLDAP-2.5"/>
<xs:enumeration value="OLDAP-2.6"/>
<xs:enumeration value="OLDAP-2.7"/>
<xs:enumeration value="OLDAP-2.8"/>
<xs:enumeration value="OML"/>
<xs:enumeration value="OPL-1.0"/>
<xs:enumeration value="OSET-PL-2.1"/>
<xs:enumeration value="OSL-1.0"/>
<xs:enumeration value="OSL-1.1"/>
<xs:enumeration value="OSL-2.0"/>
<xs:enumeration value="OSL-2.1"/>
<xs:enumeration value="OSL-3.0"/>
<xs:enumeration value="OpenSSL"/>
<xs:enumeration value="PDDL-1.0"/>
<xs:enumeration value="PHP-3.0"/>
<xs:enumeration value="PHP-3.01"/>
<xs:enumeration value="Plexus"/>
<xs:enumeration value="PostgreSQL"/>
<xs:enumeration value="Python-2.0"/>
<xs:enumeration value="QPL-1.0"/>
<xs:enumeration value="Qhull"/>
<xs:enumeration value="RHeCos-1.1"/>
<xs:enumeration value="RPL-1.1"/>
<xs:enumeration value="RPL-1.5"/>
<xs:enumeration value="RPSL-1.0"/>
<xs:enumeration value="RSA-MD"/>
<xs:enumeration value="RSCPL"/>
<xs:enumeration value="Rdisc"/>
<xs:enumeration value="Ruby"/>
<xs:enumeration value="SAX-PD"/>
<xs:enumeration value="SCEA"/>
<xs:enumeration value="SGI-B-1.0"/>
<xs:enumeration value="SGI-B-1.1"/>
<xs:enumeration value="SGI-B-2.0"/>
<xs:enumeration value="SISSL"/>
<xs:enumeration value="SISSL-1.2"/>
<xs:enumeration value="SMLNJ"/>
<xs:enumeration value="SMPPL"/>
<xs:enumeration value="SNIA"/>
<xs:enumeration value="SPL-1.0"/>
<xs:enumeration value="SWL"/>
<xs:enumeration value="Saxpath"/>
<xs:enumeration value="Sendmail"/>
<xs:enumeration value="SimPL-2.0"/>
<xs:enumeration value="Sleepycat"/>
<xs:enumeration value="Spencer-86"/>
<xs:enumeration value="Spencer-94"/>
<xs:enumeration value="Spencer-99"/>
<xs:enumeration value="SugarCRM-1.1.3"/>
<xs:enumeration value="TCL"/>
<xs:enumeration value="TMate"/>
<xs:enumeration value="TORQUE-1.1"/>
<xs:enumeration value="TOSL"/>
<xs:enumeration value="UPL-1.0"/>
<xs:enumeration value="Unicode-TOU"/>
<xs:enumeration value="Unlicense"/>
<xs:enumeration value="VOSTROM"/>
<xs:enumeration value="VSL-1.0"/>
<xs:enumeration value="Vim"/>
<xs:enumeration value="W3C"/>
<xs:enumeration value="W3C-19980720"/>
<xs:enumeration value="WTFPL"/>
<xs:enumeration value="Watcom-1.0"/>
<xs:enumeration value="Wsuipa"/>
<xs:enumeration value="X11"/>
<xs:enumeration value="XFree86-1.1"/>
<xs:enumeration value="XSkat"/>
<xs:enumeration value="Xerox"/>
<xs:enumeration value="Xnet"/>
<xs:enumeration value="YPL-1.0"/>
<xs:enumeration value="YPL-1.1"/>
<xs:enumeration value="ZPL-1.1"/>
<xs:enumeration value="ZPL-2.0"/>
<xs:enumeration value="ZPL-2.1"/>
<xs:enumeration value="Zed"/>
<xs:enumeration value="Zend-2.0"/>
<xs:enumeration value="Zimbra-1.3"/>
<xs:enumeration value="Zimbra-1.4"/>
<xs:enumeration value="Zlib"/>
<xs:enumeration value="bzip2-1.0.5"/>
<xs:enumeration value="bzip2-1.0.6"/>
<xs:enumeration value="curl"/>
<xs:enumeration value="diffmark"/>
<xs:enumeration value="dvipdfm"/>
<xs:enumeration value="eGenix"/>
<xs:enumeration value="gSOAP-1.3b"/>
<xs:enumeration value="gnuplot"/>
<xs:enumeration value="iMatix"/>
<xs:enumeration value="libtiff"/>
<xs:enumeration value="mpich2"/>
<xs:enumeration value="psfrag"/>
<xs:enumeration value="psutils"/>
<xs:enumeration value="xinetd"/>
<xs:enumeration value="xpp"/>
<xs:enumeration value="zlib-acknowledgement"/>
<xs:enumeration value="Proprietary"/>
<xs:enumeration value="Other"/>
<xs:enumeration value="Not licensed"/>
<xs:enumeration value="Freeware"/>
</xs:restriction>
</xs:simpleType>
</xs:element>
<xs:element name="collectionID" minOccurs="0" maxOccurs="unbounded">
<xs:annotation>
<xs:documentation>A tag which assigns the software to a collection in bio.tools.</xs:documentation>
<xs:appinfo>
<uiTip>Tag for a collection that the software has been assigned to within bio.tools.</uiTip>
</xs:appinfo>
<xs:appinfo>
<altova:exampleValues>
<altova:example value="emboss"/>
</altova:exampleValues>
</xs:appinfo>
</xs:annotation>
<xs:simpleType>
<xs:restriction base="nameType"/>
</xs:simpleType>
</xs:element>
<xs:element name="maturity" minOccurs="0">
<xs:annotation>
<xs:documentation>Development stage of the software product.</xs:documentation>
<xs:appinfo>
<uiTip>How mature the software product is.</uiTip>
<enum>
<enumItem>
<term>Emerging</term>
<uiTip>Nascent or early release software that may not yet be fully featured or stable.</uiTip>
</enumItem>
<enumItem>
<term>Mature</term>
<uiTip>Software that is generally considered to fulfill several of the following: secure, reliable, actively maintained, fully featured, proven in production environments, has an active community, and is described or cited in the scientific literature.</uiTip>
</enumItem>
<enumItem>
<term>Legacy</term>
<uiTip>Software which is no longer in common use, deprecated by the provider, superseded by other software, replaced by a newer version, is obsolete etc.</uiTip>
</enumItem>
</enum>
</xs:appinfo>
</xs:annotation>
<xs:simpleType>
<xs:restriction base="enumType">
<xs:enumeration value="Emerging"/>
<xs:enumeration value="Mature"/>
<xs:enumeration value="Legacy"/>
</xs:restriction>
</xs:simpleType>
</xs:element>
<xs:element name="cost" minOccurs="0">
<xs:annotation>
<xs:documentation>Monetary cost of acquiring the software.</xs:documentation>
<xs:appinfo>
<uiTip>Monetary cost of acquiring the software.</uiTip>
<enum>
<enumItem>
<term>Free of charge</term>
<uiTip>Software which available for use by all, with full functionality, at no monetary cost to the user.</uiTip>
</enumItem>
<enumItem>
<term>Free of charge (with restrictions)</term>
<uiTip>Software which is available for use at no monetary cost to the user, but possibly with limited functionality, usage restrictions, or other limitations.</uiTip>
</enumItem>
<enumItem>
<term>Commercial</term>
<uiTip>Software which you have to pay to access.</uiTip>
</enumItem>
</enum>
</xs:appinfo>
</xs:annotation>
<xs:simpleType>
<xs:restriction base="enumType">
<xs:enumeration value="Free of charge"/>
<xs:enumeration value="Free of charge (with restrictions)"/>
<xs:enumeration value="Commercial"/>
</xs:restriction>
</xs:simpleType>
</xs:element>
<xs:element name="accessibility" minOccurs="0">
<xs:annotation>
<xs:documentation>Whether there are non-monetary restrictions on accessing an online service.</xs:documentation>
<xs:appinfo>
<uiTip>Whether the software is freely available for use.</uiTip>
<enum>
<enumItem>
<term>Open access</term>
<uiTip>An online service which is available for use to all, but possibly requiring user accounts / authentication.</uiTip>
</enumItem>
<enumItem>
<term>Open access (with restrictions)</term>
<uiTip>An online service which is available for use to all, but possibly with some usage limitations and other restrictions.</uiTip>
</enumItem>
<enumItem>
<term>Restricted access</term>
<uiTip>An online service which is available for use to a restricted audience, e.g. members of a specific institute.</uiTip>
</enumItem>
</enum>
</xs:appinfo>
</xs:annotation>
<xs:simpleType>
<xs:restriction base="enumType">
<xs:enumeration value="Open access"/>
<xs:enumeration value="Open access (with restrictions)"/>
<xs:enumeration value="Restricted access"/>
</xs:restriction>
</xs:simpleType>
</xs:element>
<xs:element name="elixirPlatform" minOccurs="0" maxOccurs="unbounded">
<xs:annotation>
<xs:documentation>ELIXIR platform credited for developing or providing the software.</xs:documentation>
<xs:appinfo>
<altova:exampleValues>
<altova:example value="Training"/>
</altova:exampleValues>
</xs:appinfo>
<xs:appinfo>
<uiTip>ELIXIR platform credited for developing or providing the software.</uiTip>
</xs:appinfo>
</xs:annotation>
<xs:simpleType>
<xs:restriction base="enumType">
<xs:enumeration value="Data"/>
<xs:enumeration value="Tools"/>
<xs:enumeration value="Compute"/>
<xs:enumeration value="Interoperability"/>
<xs:enumeration value="Training"/>
</xs:restriction>
</xs:simpleType>
</xs:element>
<xs:element name="elixirCommunity" minOccurs="0" maxOccurs="unbounded">
<xs:annotation>
<xs:documentation>ELIXIR (or other) community to which the software is relevant.</xs:documentation>
</xs:annotation>
<xs:simpleType>
<xs:restriction base="enumType">
<xs:enumeration value="3D-BioInfo"/>
<xs:enumeration value="Federated Human Data"/>
<xs:enumeration value="Galaxy"/>
<xs:enumeration value="Human Copy Number Variation"/>
<xs:enumeration value="Intrinsically Disordered Proteins"/>
<xs:enumeration value="Marine Metagenomics"/>
<xs:enumeration value="Metabolomics"/>
<xs:enumeration value="Microbial Biotechnology"/>
<xs:enumeration value="Plant Sciences"/>
<xs:enumeration value="Proteomics"/>
<xs:enumeration value="Rare Diseases"/>
</xs:restriction>
</xs:simpleType>
</xs:element>
<xs:element name="elixirNode" minOccurs="0" maxOccurs="unbounded">
<xs:annotation>
<xs:documentation>ELIXIR node credited for developing or providing the software - the software is in Node Service Delivery Plan.</xs:documentation>
<xs:appinfo>
<altova:exampleValues>
<altova:example value="UK"/>