From 5238e2b76ee5824c5f943297d205f3c3c2444e1f Mon Sep 17 00:00:00 2001
From: BiocondaBot <47040946+BiocondaBot@users.noreply.github.com>
Date: Thu, 3 Oct 2024 06:14:30 +0000
Subject: [PATCH 1/3] Update tbtamr to 1.0.1

---
 recipes/tbtamr/meta.yaml | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/recipes/tbtamr/meta.yaml b/recipes/tbtamr/meta.yaml
index 459fa16a643f1..3f2a77824b06f 100644
--- a/recipes/tbtamr/meta.yaml
+++ b/recipes/tbtamr/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "tbtamr" %}
-{% set version = "0.0.4" %}
-{% set sha256 = "72db1eb835574f02b0d7768e6b04e310bd2229d0f684100004b20a133eecd882" %}
+{% set version = "1.0.1" %}
+{% set sha256 = "5f162ba12ca8af866bf2cfc442ca88f4cdb059ff16fd7271336cc1767094ff30" %}
 
 package:
   name: "{{ name }}"
@@ -12,7 +12,7 @@ source:
 
 build:
   noarch: python
-  number: 1
+  number: 0
   entry_points:
     - tbtamr=tbtamr.tbtamr:main
   run_exports:

From d174c50458ab486e9a03e8d2cd9418b8c34c6d32 Mon Sep 17 00:00:00 2001
From: BiocondaBot <47040946+BiocondaBot@users.noreply.github.com>
Date: Thu, 3 Oct 2024 07:17:02 +0000
Subject: [PATCH 2/3] Update tbtamr to 1.0.2

---
 recipes/tbtamr/meta.yaml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/recipes/tbtamr/meta.yaml b/recipes/tbtamr/meta.yaml
index 3f2a77824b06f..3ecaa20b63230 100644
--- a/recipes/tbtamr/meta.yaml
+++ b/recipes/tbtamr/meta.yaml
@@ -1,6 +1,6 @@
 {% set name = "tbtamr" %}
-{% set version = "1.0.1" %}
-{% set sha256 = "5f162ba12ca8af866bf2cfc442ca88f4cdb059ff16fd7271336cc1767094ff30" %}
+{% set version = "1.0.2" %}
+{% set sha256 = "3b1e669a015ed7bb40977c104ae22f3a4e1e49f07c84b7043f0e6b21c8a0957a" %}
 
 package:
   name: "{{ name }}"

From a1b6f171193b1319ddee941999d2e6efe3c89ab4 Mon Sep 17 00:00:00 2001
From: mencian <joshua.zhuang@yahoo.com>
Date: Thu, 3 Oct 2024 10:53:19 -0500
Subject: [PATCH 3/3] add tabulate

---
 recipes/tbtamr/meta.yaml | 16 ++++++++++------
 1 file changed, 10 insertions(+), 6 deletions(-)

diff --git a/recipes/tbtamr/meta.yaml b/recipes/tbtamr/meta.yaml
index 3ecaa20b63230..c2417217da084 100644
--- a/recipes/tbtamr/meta.yaml
+++ b/recipes/tbtamr/meta.yaml
@@ -17,17 +17,15 @@ build:
     - tbtamr=tbtamr.tbtamr:main
   run_exports:
     - {{ pin_subpackage('tbtamr', max_pin="x.x") }}
-  script: "{{ PYTHON }} -m pip install . --no-deps --ignore-installed -vv "
+  script: "{{ PYTHON }} -m pip install . --no-deps --no-build-isolation --no-cache-dir -vvv"
 
 requirements:
   host:
-    - python >=3.8
+    - python >=3.10
     - pip
   run:
-    - python >=3.8
-    - psutil
+    - python >=3.10
     - pandas
-    - csvtk
     - bwa
     - samtools =1.12
     - snpeff =5.0
@@ -39,7 +37,12 @@ requirements:
     - xlsxwriter
     - requests
     - tqdm
-
+    - joblib
+    - pydantic
+    - pytest
+    - tabulate
+    - unidecode
+    - pysam
     
 test:
   imports:
@@ -53,6 +56,7 @@ about:
   license_file: LICENSE
   license_family: "GPL3"
   summary: "A tool implementing TB-Profiler for reporting of genomic DST for M. tuberculosis in a CPHL"
+  dev_url: "https://github.com/MDU-PHL/tbtamr"
 
 extra:
   recipe-maintainers: