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piRNA plots python error #38

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rberrens opened this issue Jul 6, 2022 · 0 comments
Open

piRNA plots python error #38

rberrens opened this issue Jul 6, 2022 · 0 comments

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@rberrens
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rberrens commented Jul 6, 2022

I am tryng to run pipipes small on trimmed small RNAseq data but
When running the pipeline in get the following error:
Calls: draw_smRNA_percentage -> read.table
Execution halted
File "/usr/people/bioc1647/piPipes/bin/piPipes_nuc_percentage.py", line 33
print str (A) + '\t' + str (C) + '\t' + str (G) + '\t' + str (T)
^
SyntaxError: invalid syntax
File "/usr/people/bioc1647/piPipes/bin/piPipes_nuc_percentage.py", line 33
print str (A) + '\t' + str (C) + '\t' + str (G) + '\t' + str (T)
^
SyntaxError: invalid syntax
File "/usr/people/bioc1647/piPipes/bin/piPipes_nuc_percentage.py", line 33
print str (A) + '\t' + str (C) + '\t' + str (G) + '\t' + str (T)
^
SyntaxError: invalid syntax
File "/usr/people/bioc1647/piPipes/bin/piPipes_nuc_percentage.py", line 33
print str (A) + '\t' + str (C) + '\t' + str (G) + '\t' + str (T)
^
SyntaxError: invalid syntax

Warning messages:
1: axis.ticks.margin is deprecated. Please set margin property of axis.text instead
2: panel.margin is deprecated. Please use panel.spacing property instead
3: legend.margin must be specified using margin(). For the old behavior use legend.spacing

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