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I think this is fine, as I could not find anything in the VCF spec about key ordering, but in your vcfgo, the regex that checks the header doesn't match the ordering from ecthvar, which causes an error when using vcfgo to parse echtvar vcfs.
var typeRe = `String|Integer|Float|Flag|Character|Unknown`
var infoRegexp = regexp.MustCompile(fmt.Sprintf(`##INFO=<ID=(.+),Number=([\dAGR\.]*),Type=(%s),Description="(.*)">`, typeRe))
Can we make a change to one of these codebases? If so, which one? I am happy to submit a pull request, unless its easier for you to make these small changes yourself.
The text was updated successfully, but these errors were encountered:
Hi Brent
echtvar annotates the header with this line
I think this is fine, as I could not find anything in the VCF spec about key ordering, but in your vcfgo, the regex that checks the header doesn't match the ordering from ecthvar, which causes an error when using vcfgo to parse echtvar vcfs.
Can we make a change to one of these codebases? If so, which one? I am happy to submit a pull request, unless its easier for you to make these small changes yourself.
The text was updated successfully, but these errors were encountered: